Explore curated data sets and assays

Pluto has a large database of published data, available to explore, conduct your own analysis, and view QC reports.

Sequencing-based assays (Page 24)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 24)

GSE122376: Comparative analysis of mouse decidualization models by using RNA-seq

GSE113465: Evaluation of HSP90 inhibitor expsosure on Immune Cell Gene Expression

GSE94388: RNA editing is the essential function of ADAR1 and, in the absence of MDA5, is dispensable for normal adult homeostasis [RNAseq (Fetal Brain)]

GSE97213: Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin

GSE113756: Response of Hepatocytes to CCl4 Injury and Yap/Taz Knockout

GSE109684: Transcriptional activation by E2F4 independent of the RB family

GSE97412: Expression analysis of INO80 complex in HepG2 liver cancer cells [RNA-seq]

GSE106288: Human MAIT cells exit peripheral tissues and re-circulate via lymph in steady state conditions

GSE113594: Distinct macrophage populations upon physiological changes in adipose tissue [RNA-seq]

GSE87602: Activation of Lung Macrophages in Hypoxic Pulmonary Hypertension

GSE92250: A cell cycle-based functional screen to identify lncRNA-based cancer biomarkers

GSE115193: Evaluating pre-clinical models for studying NASH driven HCC.

GSE125596: Transcriptome-wide profiling of thyroid hormone-dependent gene expression in the mouse heart

GSE117936: Comparative bulk RNAseq analysis of Control and PTH/PTHrP recepter-deficient PTHrP+ dental follicle cells

GSE99101: Enhancer-binding of Brd4 controls cell differentiation

GSE97461: TRAP sequencing of D1 and D2 spiny projection neurons from young and old mice

GSE115423: Transcriptome analysis of the HepG2 cells expressing hepatic transcription factors

GSE113636: Transcriptome analysis of Zika infected neural stem cells

GSE98596: NMuMG cell response to TGF-beta and TGF-beta +2APB treatments

GSE113400: Determine the role of TXNDC9 in hepatocellular carcinoma progression

GSE135922: Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration

GSE100528: METTL3-mediated m6A modification is required for cerebellar development m6A modification and cerebellar development

GSE97214: Transcriptome sequencing identify a recurrent CRYL1-IFT88 chimeric transcript in hepatocellular carcinoma

GSE121299: RNA-seq of in vitro produced mouse oocytes derived from XX-, XO- and XY-ESCs

GSE99116: Multiomics Profiling Establishes the Polypharmacology of FDA-Approved CDK4/6 Inhibitors and the Potential for Differential Clinical Activity.

GSE96641: Genome-wide Screen for Differentially Methylated Long Noncoding RNAs identifies Esrp2 and lncRNA Esrp2-as Regulated by Enhancer DNA Methylation with Prognostic Relevance for Human Breast Cancer

GSE114472: OGT knockout S2VP10 cells

GSE115349: Type 1 interferon signaling is crucial from the loss of tolerance nd the development of autoreactive B cells.

GSE112361: Gene expression analysis in lungs of Mtb infected Fth+/+ and Fth-/- mice by employing RNA-Seq

GSE94444: SETDB1 depletion in primed or nave ES cells

GSE16256: UCSD Human Reference Epigenome Mapping Project

GSE40969: Molecular profiling of activated neurons by phosphorylated ribosome capture [RNA-Seq]

GSE46562: RNA-seq in neurons derived from iPSCs in controls and patients with schizophrenia and 22q11 del

GSE38841: Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: BCR-ABL transformed in vitro cell culture cells)

GSE121589: Dissecting the Individual and Collective Regenerative Behavior of Muscle Stem Cells During Aging

GSE39884: Small RNAs in undifferentiated and differentiating mouse embryonic stem cells

GSE55275: Activin A and BMP4 Modulation of Wnt/-catenin Signaling Directs Fate Specification of Mesoderm Derivatives from Human Embryonic Stem Cells

GSE54006: Massively parallel single-cell RNA-Seq for dissecting cell type and cell state compositions

GSE61505: RNA-Seq in hair follicle stem cell lineage

GSE60630: RNA-Seq to assess the transcriptional effects of G quadruplex stabilization by the G4 ligand PhenDC3 in HT-1080 cells

GSE32916: Analysis of Pro-Inflammatory Gene Activation and RNA Processing by RNAseq of Nascent Transcripts I

GSE35126: Effects of Cardiac Glycosides on RNA Expression in Prostate Cancer LNCaP-abl Cells

GSE95428: NAFLD in IL-4 and IL-10/4 KO Mice

GSE57415: Molecular architecture of transcription factor hotspots in early adipogenesis

GSE60050: Gene expression alteration in Dnmt3aKO-Idh2 mutant double mutant HSPCs

GSE30839: RibosomeProfilingof Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes

GSE32302: Genome-wide maps of polyadenylation sites in OPMD-model and control mice

GSE106302: Hippocampal gene expression from Nr2f1 heterozygous knockout and WT mice

GSE41658: Methylomic analysis identifies the involvement of migration and adhesion genes in the ageing of primary haematopoietic stem cells

GSE58495: Quantitative Analysis by Next Generation Sequencing of LSK (Lin- Sca1+ cKit+) hematopoietic progenitors and splenic B cells (naive and in vitro LPS activated) transcriptomes from Wild Type and Usp3-/- mice

GSE41785: Global analysis of Upf1 in mESCs reveals expanded scope of nonsense-mediated mRNA decay

GSE39812: Tryptamine Serves As a Proligand of the AhR Transcriptional Pathway, and the Activation Is Dependent of Monoamine Oxidases

GSE36025: Long RNA-seq from ENCODE/Cold Spring Harbor Lab

GSE44573: Next Generation Sequencing Analysis of Wild Type and Hypomorphic Nkx2-5 mutant heart Transcriptomes

GSE73376: DGCR8 acts as a novel adaptor for the exosome complex to degrade double-stranded structured RNAs

GSE57206: The role of HIF-1 in beta-glucan induced response in myeloid cell

GSE40548: RNAseq analysis of the human neutrophil transcriptome, with and without in vitro cytokine stimulation

GSE95712: Bmal1 regulates inflammatory response in macrophage

GSE35724: Comprehensive analysis of four in vitro insulin resistance models

GSE115384: RNA-seq CELSR2 knockdown vs NTC

GSE122767: Genetic AMPK activation in liver protects against diet-induced obesity and NAFLD

GSE36026: RNA-seq from ENCODE/LICR

GSE44668: Genome wide RNA-seq analysis of E14.5 Smchd1 wild type and mutant placenta

GSE95802: Celecoxib, Rofecoxib Chronically Treated Mice, Aorta RNA-Seq

GSE121132: Analysis of Grp78 deficiency in lung epithelial type 2 cells.

GSE126653: RNA-sequencing facilitates Quantitative Analysis of Wild Type and Tsg101 Transgenic cardiac transcriptomes

GSE121103: Epigenomic and transcriptomic analyses of epithelial ovarian cancer

GSE40463: STATs Shape the Active Enhancer Landscape of T Cell Populations

GSE107801: Enhanced pre-clinical anti-tumor activity of M7824, a novel bifunctional fusion protein simultaneously targeting PD-L1 and TGF-

GSE127530: NCBI GEO Submission of human whole blood transcriptomes in response to a high-fat meal

GSE46916: RNA-seq of Danio rerio and Mus musculus skin for three different age groups

GSE60283: Impact of HP1gamma and HP1gamma S83 phosphorylation on the transcriptionnal effect of PMA stimulation of mouse fibroblasts

GSE37211: DPN and Tamoxifen treatments of parathyroid adenoma cells

GSE99166: Transcriptome analysis of CD4+ T cells differentiated from wild-type and CD4cre IRF8flox mice

GSE109293: Transcriptome of Dp1Tyb and wild-type mouse embryonic fibroblasts

GSE121305: RNA-seq of colon tissue from wild type and Elf4-/- mice with colitis

GSE108526: IRF5 and IRF3 regulate distinct immune programs in plasmacytoid dendritic cells

GSE39513: Regulation of pluripotency and self-renewal of ES cells through epigenetic-threshold modulation and mRNA pruning