Bioinformatics is only the beginning
Break free from bottlenecks and do more science. Empower anyone in your team to run powerful computational biology algorithms and create beautiful visualizations with Pluto's intuitive canvas interface. Manage, analyze, and visualize biological data with unparalleled efficiency. What will you discover next?
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Assays & analyses
Novel discoveries don't come from running a single assay. Unlock productivity with Pluto's flexible platform, where you can finally analyze all of your biological data in one place.
Single cell RNA-seq
Dissect heterogeneity at the single-cell level. Use flexible preprocessing workflows in Pluto scRNA-seq and analyze individual cell gene expression profiles, uncovering cellular diversity and function by cell type, condition.
Spatial Transcriptomics
Analyze gene expression while retaining spatial context. Visualize the distribution of transcripts across tissue sections to understand the spatial organization of cells and biological processes.
CUT&RUN and CUT&Tag
Streamline epigenetic research with CUT&RUN and CUT&Tag analyses. Our platform offers efficient methods to profile chromatin and transcription factor binding sites, enhancing your epigenetic insights.
Bulk RNA-seq
Analyze gene expression at a genome-wide scale to uncover differential expression, altered regulatory pathways, transcriptional networks, and individual biomarkers and targets.
Custom pipelines
Bring custom pipelines allowing you to design and execute complex bioinformatics workflows, ensuring that your data is processed and analyzed according to your unique requirements.
PRO-seq
Map transcriptional activity with precision. PRO-seq analysis in Pluto reveals RNA Polymerase II binding sites, offering a detailed view of gene regulation.
ChIP-seq
Map global binding sites with ChIP-seq and visualize results for histones, transcription factors, or any other protein of interest.
ATAC-seq
Characterize the chromatin landscape with ATAC-seq. Pluto simplifies the analysis of chromatin accessibility, providing insights into regulatory regions and gene expression control.
Proteomics
Analyze unbiased or targeted proteomics data sets. Create signatures, identify biomarkers, and explore inter- and intra-sample variability.
Multi-omics
Bring together diverse assay data—from bulk RNA-seq and ATAC-seq to ChIP-seq and more—into a unified multi-omics experiment for in-depth insights into cellular processes and disease mechanisms.
Differential analyses
Investigate genome-wide gene expression, binding, protein levels, and more using gold-standard computational biology algorithms. Flexibly compare conditions, treatments, and any other variables relevant to your study.
Dimensionality reduction
Simplify complex data sets with our dimensionality reduction tools. Utilize PCA, UMAP, and t-SNE to uncover patterns and relationships in high-dimensional data, facilitating intuitive sample clustering.
Functional
Uncover the biological functions and pathways associated with your data. Our functional analysis tools, including GO and KEGG, provide a comprehensive view of the biological context underlying your results.
Imaging
Combine quantitative data with qualitative insights. Our imaging module enables you to annotate and quantify images directly within the platform, streamlining the integration of morphological data with molecular analyses.
Longitudinal analysis
The component of time is a critical one in biological systems. Track changes longitudinally to examine temporal and continuous data, study developmental stages, treatment responses, disease progression, and more.
Marker Expression
Investigate the expression of specific marker genes across single-cell RNA-seq data using customizable ridge plots, violin plots, and UMAP projections.
Over-representation
Identify enriched pathways and biological processes with ORA. By comparing your data against known gene sets, discover the underlying mechanisms relevant to your research.
Pathway analyses
Explore the molecular pathways driving biological functions and diseases. Use powerful pathway analysis tools including GSEA, TFEA, ORA, and STRING to facilitate the discovery of critical interactions and regulatory networks.
Summary analysis
Quickly summarize and compare raw or noramlized data across groups, however you choose to define them, for concise overview of your experimental results, enabling easy interpretation and decision-making.
Data visualization built for biology
The perfect plot is worth a thousand words, but it shouldn't take a thousand lines of code. Pluto gives every team member the power to build biology-specific visualizations, no programming required.
Explore thousands of single cell data points, inspect regions of the genome in different organisms, and customize appearance to ensure that every detail is accurate, informative, and on-brand for your organization.
Data security & privacy
is our top priority
At Pluto, we've built data security into our platform since day one. With robust security measures in place, including encryption at rest and in transit, SOC2 Type II reports, GDPR readiness, and an integrated Trust Center monitoring all components in real-time, we are committed to ensuring that your data remains secure and compliant.
Security overview
SOC2 compliant
Pluto maintains an AICPA System and Organization Controls (SOC) SOC 2 Type 2 report, and performs continuous monitoring on adherence to SOC 2 controls. Visit our Trust Center to see our real-time compliance status.
End-to-end data encryption
Security is built into our data transfer mechanisms and critical to our business. Pluto protects your data by encrypting it both in transit and at rest. AES256 is used for encryption at rest and storage and TLS is used for encryption in transit.
GDPR compliant
Pluto is fully GDPR compliant, with robust data protection controls continuously monitored and enforced, and a dedicated GDPR EU representative ensuring adherence to EU data regulations. Contact our team to learn more about our comprehensive compliance measures.
Privacy
Pluto is committed to user privacy and provides a high standard of privacy protection to all of our users and clients. We apply stringent individual privacy protections through the use of role-based permissions and access controls, in accordance with Pluto’s data security and privacy controls.
Trust Center
Pluto's platform is monitored in real-time for security and compliance for controls in infrastructure security, organizational security, product security, internal security procedures, and data and privacy. Visit our Trust Center for a detailed view of Pluto's compliance status and certifications, policies, and other resources.
Cloud-scaled compute
Leverage the power of cloud computing to scale your analyses effortlessly. Pluto Bio's cloud-scaled compute capabilities provide the flexibility to handle datasets of any size, ensuring that your research progresses smoothly without computational bottlenecks.
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Advanced data integration
Simplify your workflow with seamless data integration. Pluto Bio facilitates easy integration of diverse data types and sources into a unified platform. From genomic sequences to proteomic profiles and clinical data, our advanced data integration tools ensure that you can bring all your data together for comprehensive analysis, enhancing your research's depth and scope.
Learn MoreReal-time collaboration and sharing
Empower your team with real-time collaboration and data sharing. With Pluto Bio, you can instantly share findings, datasets, and analyses with your team and collaborators worldwide. Our platform supports synchronous editing, comments, and discussion threads, enabling dynamic collaboration that drives your research forward faster.
Learn MoreThe future of
science where you work
Pluto is redefining the scientific collaboration process for mission-focused life sciences organizations.
Scientific Insights FROM THE PLUTO TEAM
Unlock the Power of Data-Driven Discovery: The Pluto Team is dedicated to transforming the way scientific research is conducted. With our platform, gain insights from a wealth of scientific knowledge, distilled into actionable data. Our in-house experts regularly contribute to a growing library of resources, including white papers, case studies, and research articles, to keep you at the forefront of computational biology. Stay informed with the latest trends, techniques, and advancements, directly influencing your research outcomes for the better.
Collaboration within your team of Scientists
Fostering Seamless Scientific Collaboration: In the dynamic environment of scientific research, collaboration is key to innovation and discovery. Pluto Bio bridges the gap between multidisciplinary teams, offering a suite of collaborative tools designed to enhance communication, data sharing, and project management. Whether you're coordinating with a colleague next door or across the globe, our platform ensures that your team can work together efficiently, securely, and without barriers. Experience how Pluto Bio’s collaborative ecosystem can streamline your research process, fostering a culture of cooperation and accelerating scientific progress.
Integrations
Increase your end-to-end analysis velocity by leveraging Pluto's integrations to collaborate with your team in the tools they already use.
View all integrations
BaseSpace
is a cloud-based platform capable of storing FASTQ files from Illumina sequencers. Import FASTQ files directly from BaseSpace into Pluto to run pipelines for RNA-seq, ChIP-seq, CUT&RUN, and more.
Azure
Active Directory (AD) integrates with Pluto in minutes for seamless, enterprise-grade single sign-on that your team can trust.
SAML 2.0
or Security Assertion Markup Language enables any identity management platform (IDP) to be integrated with Pluto's application.
Okta
can be integrated with Pluto to allow for single-sign on by your users.
Notion
is a powerful, cloud-based document platform. You can embed live, interactive Pluto plots into your Notion document to keep your whole team in sync.
Benchling
is a powerful, cloud-based platform for biotechnology research and development. With Benchling + Pluto, your team can finally close the loop from initial experiment planning to final analysis.
Coda
is an interactive doc that brings words, data, and teams together. Keep your team in sync by embedding live, interactive Pluto plots into your Coda docs.
Smartsheet
offers a rich set of views, workflows, reports, and dashboards to track R&D plans, resources, and schedules. Embed Pluto plots in Smartsheet dashboards to save your team even more time.
Airtable
is a low-code platform for building collaborative apps. Integrate Pluto results into your workflow automatically, collaborate, and achieve ambitious outcomes.
Genewiz by Azenta
is a next-generation sequencing provider. Go straight from sequencing to analysis by importing FASTQ files from Genewiz directly into Pluto.
Novogene
Pooled DNA oligos offered between 40 and 350 bases. Delivered dry in a single tube. Get started immediately: fast delivery and no amplification required. CRISPR genome editing.
Gene Expression Omnibus (GEO)
is a public functional genomics data repository for array- and sequence-based data. Use Pluto to investigate data from GEO without needing to wrangle file formats or write your own scripts.
Google Sign-in
integration enables 1-click login to Pluto using your Google apps accounts.
HGNC
gene names are automatically linked and annotated when you upload your data to Pluto, so you can focus on investigating the biology instead of sifting through databases.
OMIM
annotations are automatically linked when you upload your data to Pluto, to help you more quickly investigate the biology underlying a disease of interest.
Colabra
is a powerful electronic lab notebook and project management platform. You can embed Pluto plots directly into Colabra notebook entries, allowing you to track every step from sample preparation to analysis and results!
Pluto API
is available for a variety of uses. Giving developers programmatic access to the entities that users interact with using the Pluto web app
Microsoft Word
is available for you to export plots, methods, references, and other information from Pluto to Microsoft Word.
Microsoft Powerpoint
is available for you to export plots, methods, references, and other information from Pluto to Microsoft Powerpoint.
Synapse | Sage Bionetworks
allows you to import governed datasets from Synapse into Pluto for analysis.
FAQs
Increase your end-to-end analysis velocity by leveraging Pluto's integrations to collaborate with your team in the tools they already use.
Chat with our experts