Bioinformatics is only the beginning

Break free from bottlenecks and do more science. Empower anyone in your team to run powerful computational biology algorithms and create beautiful visualizations with Pluto's intuitive canvas interface. Manage, analyze, and visualize biological data with unparalleled efficiency. What will you discover next?

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Assays & analyses

Novel discoveries don't come from running a single assay. Unlock productivity with Pluto's flexible platform, where you can finally analyze all of your biological data in one place.

Single cell RNA-seq

Dissect heterogeneity at the single-cell level. Use flexible preprocessing workflows in Pluto scRNA-seq and analyze individual cell gene expression profiles, uncovering cellular diversity and function by cell type, condition.

CUT&RUN and CUT&Tag

Streamline epigenetic research with CUT&RUN and CUT&Tag analyses. Our platform offers efficient methods to profile chromatin and transcription factor binding sites, enhancing your epigenetic insights.

Bulk RNA-seq

Analyze gene expression at a genome-wide scale to uncover differential expression, altered regulatory pathways, transcriptional networks, and individual biomarkers and targets.

Custom pipelines

Bring custom pipelines allowing you to design and execute complex bioinformatics workflows, ensuring that your data is processed and analyzed according to your unique requirements.

PRO-seq

Map transcriptional activity with precision. PRO-seq analysis in Pluto reveals RNA Polymerase II binding sites, offering a detailed view of gene regulation.

ChIP-seq

Map global binding sites with ChIP-seq and visualize results for histones, transcription factors, or any other protein of interest.

ATAC-seq

Characterize the chromatin landscape with ATAC-seq. Pluto simplifies the analysis of chromatin accessibility, providing insights into regulatory regions and gene expression control.

Proteomics

Analyze unbiased or targeted proteomics data sets. Create signatures, identify biomarkers, and explore inter- and intra-sample variability.

Differential analyses

Differential analyses

Investigate genome-wide gene expression, binding, protein levels, and more using gold-standard computational biology algorithms. Flexibly compare conditions, treatments, and any other variables relevant to your study.

Dimensionality reduction

Dimensionality reduction

Simplify complex data sets with our dimensionality reduction tools. Utilize PCA, UMAP, and t-SNE to uncover patterns and relationships in high-dimensional data, facilitating intuitive sample clustering.

Functional

Functional

Uncover the biological functions and pathways associated with your data. Our functional analysis tools, including GO and KEGG, provide a comprehensive view of the biological context underlying your results.

Imaging

Imaging

Combine quantitative data with qualitative insights. Our imaging module enables you to annotate and quantify images directly within the platform, streamlining the integration of morphological data with molecular analyses.

Longitudinal analysis

Longitudinal analysis

The component of time is a critical one in biological systems. Track changes longitudinally to examine temporal and continuous data, study developmental stages, treatment responses, disease progression, and more.

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Marker Expression

Investigate the expression of specific marker genes across single-cell RNA-seq data using customizable ridge plots, violin plots, and UMAP projections.

Over-representation

Over-representation

Identify enriched pathways and biological processes with ORA. By comparing your data against known gene sets, discover the underlying mechanisms relevant to your research.

Pathway analyses

Pathway analyses

Explore the molecular pathways driving biological functions and diseases. Use powerful pathway analysis tools including GSEA, TFEA, ORA, and STRING to facilitate the discovery of critical interactions and regulatory networks.

Summary analysis

Quickly summarize and compare raw or noramlized data across groups, however you choose to define them. Use summary analysis for a concise overview of your experimental results, enabling easy interpretation and decision-making.

Data visualization built for biology

The perfect plot is worth a thousand words, but it shouldn't take a thousand lines of code. Pluto gives every team member the power to build biology-specific visualizations, no programming required.


Explore thousands of single cell data points, inspect regions of the genome in different organisms, and customize appearance to ensure that every detail is accurate, informative, and on-brand for your organization.

Bar plot & boxplot
Scatterplot
Volcano plot
Heatmap
Kaplan-Meier curve
Line plot
Enrichment plot
Top pathways
Integrative Genome Viewer (IGV) plot
Tornado plot
TSS profile plot
Cluster plot
Images
Graphpad Prism figures
Ridge plot
Violin plot
UMAP plot
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IGV visualizationColor selectorPluto glass graphic 3

Data security & privacy
is our top priority

At Pluto, we've built data security into our platform since day one. With robust security measures in place, including encryption at rest and in transit, SOC2 Type II reports, GDPR readiness, and an integrated Trust Center monitoring all components in real-time, we are committed to ensuring that your data remains secure and compliant.

Security overview
SOC2 compliant

SOC2 compliant

Pluto maintains an AICPA System and Organization Controls (SOC) SOC 2 Type 2 report, and performs continuous monitoring on adherence to SOC 2 controls. Visit our Trust Center to see our real-time compliance status.

End-to-end data encryption

End-to-end data encryption

Security is built into our data transfer mechanisms and critical to our business. Pluto protects your data by encrypting it both in transit and at rest. AES256 is used for encryption at rest and storage and TLS is used for encryption in transit.

GDPR-ready

GDPR-ready

Pluto offers a GDPR-compliant platform for enterprise partners and performs system-wide, continuous monitoring on adherence to GDPR compliance and controls. Please set up a time to talk with our team to discuss your specific needs.

Privacy

Privacy

Pluto is committed to user privacy and provides a high standard of privacy protection to all of our users and clients. We apply stringent individual privacy protections through the use of role-based permissions and access controls, in accordance with Pluto’s data security and privacy controls.

Trust Center

Trust Center

Pluto's platform is monitored in real-time for security and compliance for controls in infrastructure security, organizational security, product security, internal security procedures, and data and privacy. Visit our Trust Center for a detailed view of Pluto's compliance status and certifications, policies, and other resources.

Cloud-scaled compute

Leverage the power of cloud computing to scale your analyses effortlessly. Pluto Bio's cloud-scaled compute capabilities provide the flexibility to handle datasets of any size, ensuring that your research progresses smoothly without computational bottlenecks.

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Advanced data integration

Simplify your workflow with seamless data integration. Pluto Bio facilitates easy integration of diverse data types and sources into a unified platform. From genomic sequences to proteomic profiles and clinical data, our advanced data integration tools ensure that you can bring all your data together for comprehensive analysis, enhancing your research's depth and scope.

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Real-time collaboration and sharing

Empower your team with real-time collaboration and data sharing. With Pluto Bio, you can instantly share findings, datasets, and analyses with your team and collaborators worldwide. Our platform supports synchronous editing, comments, and discussion threads, enabling dynamic collaboration that drives your research forward faster.

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The future of
science where you work

Pluto is redefining the scientific collaboration process for mission-focused life sciences organizations.

Scientific Insights FROM THE PLUTO TEAM

Unlock the Power of Data-Driven Discovery: The Pluto Team is dedicated to transforming the way scientific research is conducted. With our platform, gain insights from a wealth of scientific knowledge, distilled into actionable data. Our in-house experts regularly contribute to a growing library of resources, including white papers, case studies, and research articles, to keep you at the forefront of computational biology. Stay informed with the latest trends, techniques, and advancements, directly influencing your research outcomes for the better.

Collaboration within your team of Scientists

Fostering Seamless Scientific Collaboration: In the dynamic environment of scientific research, collaboration is key to innovation and discovery. Pluto Bio bridges the gap between multidisciplinary teams, offering a suite of collaborative tools designed to enhance communication, data sharing, and project management. Whether you're coordinating with a colleague next door or across the globe, our platform ensures that your team can work together efficiently, securely, and without barriers. Experience how Pluto Bio’s collaborative ecosystem can streamline your research process, fostering a culture of cooperation and accelerating scientific progress.

Integrations

Increase your end-to-end analysis velocity by leveraging Pluto's integrations to collaborate with your team in the tools they already use.

View all integrations
BaseSpace

BaseSpace

is a cloud-based platform capable of storing FASTQ files from Illumina sequencers. Import FASTQ files directly from BaseSpace into Pluto to run pipelines for RNA-seq, ChIP-seq, CUT&RUN, and more.

Azure

Azure

Active Directory (AD) integrates with Pluto in minutes for seamless, enterprise-grade single sign-on that your team can trust.

SAML 2.0

SAML 2.0

or Security Assertion Markup Language enables any identity management platform (IDP) to be integrated with Pluto's application.

Okta

Okta

can be integrated with Pluto to allow for single-sign on by your users.

Notion

Notion

is a powerful, cloud-based document platform. You can embed live, interactive Pluto plots into your Notion document to keep your whole team in sync.

Benchling

Benchling

is a powerful, cloud-based platform for biotechnology research and development. With Benchling + Pluto, your team can finally close the loop from initial experiment planning to final analysis.

Coda

Coda

is an interactive doc that brings words, data, and teams together. Keep your team in sync by embedding live, interactive Pluto plots into your Coda docs.

Smartsheet

Smartsheet

offers a rich set of views, workflows, reports, and dashboards to track R&D plans, resources, and schedules. Embed Pluto plots in Smartsheet dashboards to save your team even more time.

Airtable

Airtable

is a low-code platform for building collaborative apps. Integrate Pluto results into your workflow automatically, collaborate, and achieve ambitious outcomes.

Genewiz by Azenta

Genewiz by Azenta

is a next-generation sequencing provider. Go straight from sequencing to analysis by importing FASTQ files from Genewiz directly into Pluto.

Novogene

Novogene

Pooled DNA oligos offered between 40 and 350 bases. Delivered dry in a single tube. Get started immediately: fast delivery and no amplification required. CRISPR genome editing.

Gene Expression Omnibus (GEO)

Gene Expression Omnibus (GEO)

is a public functional genomics data repository for array- and sequence-based data. Use Pluto to investigate data from GEO without needing to wrangle file formats or write your own scripts.

Google Sign-in

Google Sign-in

integration enables 1-click login to Pluto using your Google apps accounts.

HGNC

HGNC

gene names are automatically linked and annotated when you upload your data to Pluto, so you can focus on investigating the biology instead of sifting through databases.

OMIM

OMIM

annotations are automatically linked when you upload your data to Pluto, to help you more quickly investigate the biology underlying a disease of interest.

Colabra

Colabra

is a powerful electronic lab notebook and project management platform. You can embed Pluto plots directly into Colabra notebook entries, allowing you to track every step from sample preparation to analysis and results!

Pluto API

Pluto API

is available for a variety of uses. Giving developers programmatic access to the entities that users interact with using the Pluto web app

Microsoft Word

Microsoft Word

is available for you to export plots, methods, references, and other information from Pluto to Microsoft Word.

Microsoft Powerpoint

Microsoft Powerpoint

is available for you to export plots, methods, references, and other information from Pluto to Microsoft Powerpoint.

FAQs

Increase your end-to-end analysis velocity by leveraging Pluto's integrations to collaborate with your team in the tools they already use.

Chat with our experts

What types of data can I analyze with Pluto?

Pluto supports a wide range of data types including next generation sequencing (NGS) data such as bulk and single cell RNA-seq, ATAC-seq, ChIP-seq, and more, plus unbiased and targeted metabolomics and proteomics data types. For each assay type, you can import data in different formats (e.g. FASTQ, CSV), run pipelines, perform analysis, and create visualizations.

How does Pluto Bio handle large datasets? Are there size limits?

Pluto leverages resumable upload technology and cloud-scaled compute capabilities, allowing you to analyze datasets of any size efficiently without worrying about computational bottlenecks. Pluto subscriptions include all storage and compute, so you'll never see any hidden or usage-based costs.

How does Pluto ensure the security of my data?

Pluto implements industry-standard security measures for cloud-based software, including data encryption at rest and in transit, to protect your data. We adhere to strict compliance standards such as SOC2 and GDPR - visit trust.pluto.bio for more information.

Is Pluto suitable for collaboration across different teams?

Absolutely. Pluto is designed to facilitate seamless collaboration between biologists, bioinformaticians, science leads, managers, and more. Collaboration features like real-time data sharing, comments, and integrations with platforms like Benchling, Colabra, Notion, and Smartsheet to keep your team in sync.

Can I integrate Pluto with other platforms?

Yes, Pluto is an API-driven platform that supports integrations with various tools your team may already use. Examples include BaseSpace for FASTQ file storage, Azure Active Directory for single sign-on, and Benchling for research and development collaboration, streamlining your workflow. Visit our integrations page for details.

Does Pluto offer educational resources for new users?

Yes, Pluto offers a comprehensive knowledge base, tutorials, and learning series to help new users get started and make the most out of the platform. We also provide tailored training and data migration support during your onboarding and throughout your subscription.

Can I customize data analyses and visualizations in Pluto?

Yes, each pipeline, analysis, and visualization option in Pluto contains an easy-to-understand UI with different parameters for customization. Analyses and figures can be adjusted according to your experimental design and research question without needing to code, ensuring that you can perform the analyses exactly as desired.

What types of visualizations can I create with Pluto?

Pluto supports a variety of data visualizations. Some popular examples include bar plots, scatterplots, volcano plots, heatmaps, Kaplan-Meier curves, and more. Our team would be delighted to show you a demo of how Pluto's flexible visualization canvas helps scientific teams effectively communicate their findings.

Why do I need to talk to your sales team to get started?

We care about our clients - you're the reason we do what we do! To ensure your team has the best experience possible, we tailor every plan to a company's unique R&D needs and goals. This helps us ensure you are successful from day 1 of onboarding in achieving your upcoming milestones.

What is the onboarding and implementation timeline for getting started with Pluto?

We take a tailored approach to designing plans, but Pluto was built to support diverse companies and goals. For most small- to medium-sized companies, your team can get up and running in Pluto same-day. Enterprise clients may take a little longer depending on integrations (e.g. SSO).

What additional support options are available for Pluto users?

Pluto offers a range of support options including a detailed help center, direct support channels, and a community forum where users can ask questions and share insights.

Do you offer discounts for academic and government users?

Yes, we're always happy to work with academic, government, and non-profit organizations to craft a plan that works for your budget and use-case. We also offer flexible partnerships for CROs, consultancies, and other service providers to support how they serve their own clients at scale.

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demo today

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