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Sequencing-based assays (Page 23)

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Explore curated data sets and assays

Sequencing-based assays (Page 23)

GSE98599: BCG reprogramming of hematopoietic stem cells generates protective innate immunity against tuberculosis (RNA-Seq)

GSE106275: Alteration of the transcriptional program in dendritic cells by GOLPH2

GSE141228: Sporadic activation of an oxidative stress-dependent NRF2p53 signaling network in breast epithelial spheroids and premalignancies

GSE97060: Argonaute CLIP defines a deregulated miR-122 bound transcriptome that predicts patient survival in human liver cancer (Mouse RNA-Seq)

GSE124620 (mouse): Virus-specific memory T cells populate tumors and can be repurposed for tumor immunotherapy

GSE113628: A fast PAR-CLIP variant using phenolic extractions

GSE99409: Plagl1/Zac1 regulates extracellular matrix genes and the imprinted gene network

GSE138889: Dysregulation of different classes of tRNA fragments in chronic lymphocytic leukemia

GSE87043: The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [RNA-Seq_Mm]

GSE97770: Inactivation of transcription factor HNF-1 with CRISPR/Cas9 induces epithelial-mesenchymal transition

GSE87069: Single-cell RNA Sequencing Uncovers A Close Relationship Between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages

GSE100265: Loss of a CDR1as, a conserved mammalian circRNA, causes miRNA de-regulation and a psychiatric phenotype [rRNA-depleted RNA-Seq]

GSE96917: Splicing Modulators Act at the Branch Point Adenosine Binding Pocket Defined by the PHF5A-SF3b Complex

GSE97223: Expression profiles of genetically engineered mouse model tumors (GNA11 Q209L and GNA11 Q209L Bap1 KO)

GSE97941: Single cell analysis of atherosclerosis baseline and regression macrophages-surgical model

GSE138121: scRNAseq of human iPSC-derived motor neurons from control and ALS patients.

GSE85520: IRF8 transcription factor controls survival and function of terminally differentiated conventional and plasmacytoid dendritic cells respectively

GSE95315: Transcriptome analysis of single cells from the mouse dentate gyrus [10X]

GSE97184: Intestinal epithelial and intraepithelial T cell crosstalk mediates a dynamic response to infection

GSE98027: Changes in gene expression due to alpha-crystallin mutations cryaa-R49C and cryab-R120G in mutant knock-in mouse lenses

GSE98030: Sequencing of ponatinib-resistant LC-2/ad derivatives (PR1 and PR2) and parental LC-2/ad cells

GSE100469: 4sU-seq of HFF exposed to salt and heat stress

GSE100449: Within-cell-type heterogeneity mediates parallel hippocampal output

GSE96568: Single cell RNA-seq reveals expansion of IGRP-reactive CD4+ T cells in recent onset type I diabetes (single-cell RNA-seq of CD4+ pooled islet antigen-reactive T cells)

GSE85513: Genome structure and organization in mouse CD8 T cells [RNA-seq]

GSE95401: The cerebrovascular response to injury and disease

GSE97204: Effect of selective glucocorticoid receptor modulation (SGRM) on gene expression in human prostate cancer cell lines

GSE111247: RNA sequencing of LNZ308 glioma cells treated under differential conditions including monotherapies, dual therapy and synergistic triple regimen employing -irradiation, temozolomide and oncolytic measles virus.

GSE139883: RNA sequencing of sorted immune cells from WT and CD4Cre-Yapfloxed mice from tumors and tumor-draining lymph nodes

GSE97930: Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain [snDrop-seq]

GSE98086: Transcriptome profiling of Peyers patch naive and germinal center B cells

GSE93909: Type I interferon signaling attenuates Regulatory T cells function in LCMV infection

GSE132684: A mouse mutation that dysregulates neighboring Galnt17 and Auts2 genes is associated with phenotypes related to the human AUTS2 syndrome

GSE113609: MPTAC determines APP fragmentation via sensing sulfur amino acid catabolism

GSE116516: Effect of ALOXE3 overexpression on primary murine hepatocyte gene expression profiles

GSE114260: Effect of estrogen (E2) treatment on the C4-12 relative to the MCF7 cells

GSE96619: Interferon receptor signaling pathways regulating PD-L1 and PD-L2 expression

GSE116538: Hypoxia serum starved Flt-1 wild type and Flt-1 heterozygote BMDMs

GSE98580: High capacity of the endoplasmic reticulum to prevent secretion and aggregation of amyloidgenic proteins

GSE98212: A third generation therapeutic vaccine for human visceral leishmaniasis and post kala azar dermal leishmaniasis: first-in-human trial of ChAd63-KH

GSE110097: Analysis of Th17 gene signature in the presence of CD28 costimulation in human CD4 nave T cells

GSE86225: Single-cell transcriptomic analyses reveal distinct dorsal/ventral pancreatic programs

GSE97645: Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs

GSE114528: Endovascular progenitors invade melanoma tumors and differentiate towards a variety of vascular beds to promote tumor metastasis

GSE95386: TRIM24 is an oncogenic transcriptional co-activator of STAT3 in glioblastoma

GSE130017: Analysis of the expression profile of skin fibroblasts FACS-sorted from mice overexpressing activin and/or oncogenes of human papilloma virus 8 in keratinocytes.

GSE85512: TSHZ3 deletion causes an autism syndrome and defects in cortical projection neurons

GSE114285: Next Generation Sequencing Facilitates Quantitative Analysis of ES, pMN, MN, and IN Transcriptomes

GSE94343: ATF4 inhibition by p62 represses stromal metabolic reprogramming and tumorigenesis

GSE100687: RNA-Seq analysis of breast cancer cells after shikonin treatment

GSE97443: RNA-seq in acute myeloid leukemia (AML) cells with and without knockdown of METTL14

GSE94367: ATF4 inhibition by p62 represses stromal metabolic reprogramming and tumorigenesis II

GSE87093: Identification of Klf9-regulated genes in HT22 tissue culture cells [RNA-Seq]

GSE114417: RNA-seq single cells analysis of 2 tumors from KPC (KrasLSL-G12D/+; Trp53LSL-R172H/+; Pdx1-Cre) mice

GSE113616: Stromal Fibroblasts Drive Single Cell Heterogeneity in Pancreatic Cancer

GSE116620: RNA-seq analysis of LSK from Oga(Vav-Cre) mice compared to wildtype

GSE116566: Expression data from WT and Trim24-deficient tumor-associated macrophage(TAM) sorted from B16 bearing mouse

GSE114814: Next Generation Sequencing for Quantitative Transcriptomic Profiling of TLR7 deficiency in Neurons

GSE114502: Altered mRNA splicing by mutant p53 activates oncogenic RAS in pancreatic cancer

GSE113848: Transcriptome sequencing after MAGOHB knockdown in MAGOH-deleted or non-deleted cancer cells

GSE142895: Robust partitioning of microRNA targets from downstream regulatory changes [RNA-seq]

GSE92699: Distinct mesenchymal lineages and niches promote epithelial self-renewal and myofibrogenesis in the lung

GSE123153: Gene expression comparison of exhausted CD8 T cells after PD-L1 blockade alone or PD-L1 blockade combined with LPS

GSE127205: RNA-seq to compare gene expression profiles between Asf1a WT and Asf1a KO cells

GSE115322: Combined phosphoproteome and transcriptome analysis of the macrophage response to mycobacterial cord factor reveals a dichotomy of MINCLE-dependent and -independent signaling

GSE97275: Genome-wide mRNA expression profiling of ZMYND11 crispr KO in NIH3T3 cells upon IFN treatment.

GSE115077: The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders [RNA-seq]

GSE96981 (human): Multilineage communication regulates human liver bud self-organization from pluripotency II

GSE94673: RNA-sequencing of brain ECs isolated at P8 from mice with EC-specific deletion of YAP/TAZ

GSE98729: Cortical gene expression of WT, Grin1 knockdown, and Grin1 Cre rescue mice

GSE119248: PatchSeq analysis of Pthlh expressing cells of the mouse dorsolateral striatum

GSE109805: Comparison of gene expression profiles of ex vivo sorted Common Lymphoid Progenitors (CLPs) and in vitro cultured cCLPs.

GSE96729: Conditional p120ctn deletion in pancreatic ductal cells

GSE94636: Effects of FTY720 on B cells in experimental autoimmune encephalomyelitis (EAE)

GSE112711: Host and genetic viral adaptations enable development of an immunocompetent mouse model of Zika virus infection

GSE99559: SQSTM1/p62-directed metabolic reprogramming is essential for normal neurodifferentiation

GSE97440 (mouse): RNA-sequencing of human leukemia cells and mouse hematopoietic progenitors

GSE95635: RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination