As a CSO, your vision sets the course for your organization's scientific endeavors. Pluto Bio equips you with the tools to lead with innovation, make informed decisions, and foster a culture of excellence in research and development.
Lead with Data and Innovation
Pluto Bio empowers CSOs to drive their organization's research and development forward with cutting-edge data management and analysis tools. Streamline your scientific workflows to accelerate innovation and maintain a competitive edge in rapidly evolving industries.
Cultivate a research environment that prioritizes data integrity, collaboration, and scientific discovery. Pluto Bio facilitates seamless collaboration across teams and disciplines, enhancing the efficiency and quality of research outputs.
Equip your organization with the insights needed for strategic decision-making. Pluto Bio's advanced analytics and visualization tools enable CSOs to derive actionable insights from complex data sets, ensuring that your strategic initiatives are backed by robust data.
In the quest for scientific breakthroughs, efficiency and speed are paramount. Pluto Bio provides the infrastructure to accelerate your R&D processes, from data collection and analysis to visualization and reporting, allowing your team to focus on innovation and discovery.
Break down silos and enhance cross-functional collaboration with Pluto Bio. Our platform is designed to facilitate communication and data sharing across departments, driving interdisciplinary research and fostering a unified approach to scientific challenges.
Strategic decisions require a solid foundation of data. Pluto Bio's comprehensive analytics suite transforms raw data into insightful, actionable intelligence, enabling CSOs to guide their organizations with confidence and clarity.
A platform for any size and type of organization
We're excited to unveil an updated brand for Pluto Bio! The new brand elevates our mission to empower every scientist to run analyses & create beautiful visualizations with modern, collaborative software.
Ready to experience the most intuitive scRNA-seq experience yet?
We’re proud to highlight a new paper citing Pluto, published in Cardiovascular Research by Dr. Priyatansh Gurha at The University of Texas Health Science Center.
Increase collaboration with third-party apps in Pluto
Pluto is excited to attend the 42nd annual JPM Healthcare Conference.
We’re excited to share a look at some of the latest product updates we’ve been working on, and give you a sneak peek into new features. Here’s the latest: Comments and Notes, Covariates, Export to Microsoft Word and Powerpoint, and more.
To draw accurate and meaningful conclusions from RNA-seq data, it is essential to consider covariates, which are additional, potentially “hidden” variables that may impact gene expression in your experiment
We’re proud to highlight a new paper citing Pluto, published in Nature Communications by Dr. Queeny Dasgupta at the Wyss Institute at Harvard University.
Comments and research notes allow team collaboration within Pluto
New in Pluto: Graphpad Prism support, SDKs, and expanded experiments ✨
The results are in for G2's Best of Pharma & Biotech software - Fall 2023
Check out the latest summer feature releases from Pluto! Sync your interactive analyses, visualizations and results to Benchling, create private and public share links, plus build multi-panel figures with Storyboards
Accelerate workflows by syncing interactive Pluto visualizations to the Benchling R&D Cloud
Dive into the world of Precision Run-On sequencing (PRO-seq) in this comprehensive blog post. Discover the origins of PRO-seq, how it compares with traditional RNA-seq, and explore a step-by-step guide on conducting a PRO-seq experiment. Uncover how this innovative technology is advancing our understanding of transcriptional dynamics and revolutionizing genomic research.
Pluto was named one of the 2023 Top Vertical SaaS Companies to Watch by Headline VC and Bain Capital Ventures.
The company born from a Harvard research institute is ramping up its sales strategy.
The Wyss Institute article on advice from Wyss lumineers to life science entrepreneurs
The Company’s web-based, computational biology platform empowers researchers to analyze and visualize high-dimensional biological data, and intuitively interpret and present novel findings
RNA sequencing (RNA-Seq) has revolutionized the way we study gene expression. The data deluge it produces, however, presents a critical question: how can we make valid comparisons between different samples or conditions?
Learn about key file formats in high-throughput research, including FASTQ, FASTA, BAM/SAM, BAI, SAM, VCF, GFF/GTF, BED, BedGraph, BigWig, and PDB. Discover how each format is used, what information it contains, and its significance in analyzing ChIP-seq and ATAC-seq data. Understanding these formats is crucial for efficiently handling and analyzing high-throughput data, enabling valuable biological insights and discoveries.
Check out the latest features from Pluto for 2023! Upgrade your presentation game with interactive slides and live data, get early access to the new Scientific Storyboards feature, auto-detect RNA-seq strandedness, and access over 14,000 published experiments. Plus, learn about differential expression analysis in the latest Pluto Learning Series. Join the Pluto community today!
In the field of genomics and bioinformatics, research discovery can be slowed down by the time and resources required to analyze and interpret large datasets. Bioinformatics platforms, which are specialized software or online tools that provide a range of analysis functions, can help to streamline the process and accelerate research discovery.
See your end-of-year wrap-up with real-time metrics
Pluto will be participating in the upcoming 41st annual JPM Healthcare Conference.
We’re proud to highlight a new paper citing Pluto, published today in Cells by Dr. Holger Russ’ lab at the Barbara Davis Center for Diabetes, University of Colorado School of Medicine.
Curious about CUT&RUN and when you would use it? Learn more in this Pluto blog post about getting started with CUT&RUN.
This blog post explains the differences between computational biology and bioinformatics. Bioinformatics is concerned with the development and application of computational methods for analyzing and interpreting large biological datasets, while computational biology involves mathematical models and computer simulations to study complex biological systems and processes. The post also describes the different tools and platforms used in each field and how modern SaaS platforms are bringing the two fields together. Finally, a top 10 list summarizes the main differences between computational biology and bioinformatics.
The Wyss Institute article on advice from Wyss lumineers to life science entrepreneurs
Kaplan-Meier curves are an essential tool in computational biology research, allowing analysis of survival data and identification of important genes and pathways associated with specific traits or diseases. Learn more about their importance in this blog post. #computationalbiology #KaplanMeier #survivalanalysis
A mini intro to RSEM, a workhorse in RNA-seq data quantification.
Pluto is revolutionizing how R&D teams think about their results and figures.
Unlocking the power of big data in biology with dimensionality reduction techniques. Explore how PCA, t-SNE, and other methods are driving insights in computational biology. #DimensionalityReduction #ComputationalBiology #BigDataInsights
Discover the power of Integrative Genomics Viewer (IGV) plots - a highly customizable and interactive tool for visualizing and exploring genomic data. Learn how IGV plots can be used in genomic research and the methods for creating data used in these plots. #genomics #bioinformatics.
Differential expression analysis is a powerful tool used to identify genes or transcripts that are differentially expressed between two or more conditions or sample types. This technique is commonly used in the field of genomics, transcriptomics, and proteomics to study the molecular mechanisms underlying different biological processes, such as disease development, response to treatment, or adaptation to different environments.
In this blog post we will explain what Z-scores are how they are calculated and how they can be used in RNA-seq analysis.
The Best of Show Awards offers exhibitors at the Bio-IT World Conference & Expo an opportunity to showcase their new products.
The Pluto team is attending our first Bio-IT World Conference & Expo in Boston May 3-5, 2022! We’re looking forward to learning about all of the impactful research the attendees are doing, and sharing how Pluto is accelerating R&D for life sciences organizations of all sizes.
We’re excited to share a look at some of the latest product updates we’ve been working on, and give you a sneak peek into new features. Here’s the latest: Flexible plot layouts, New analysis type: Time-to-event or survival analysis, Normalization for count data, and more.
Read the Data Magazine news post which features Pluto in their article showcasing their top picks for the best Denver, Colorado based Machine Learning companies.
qPCR has transformed molecular biology by providing unparalleled accuracy and sensitivity in the detection and quantification of nucleic acid sequences. Despite its potential drawbacks, such as cost and optimization requirements, qPCR has proven invaluable in research, clinical diagnostics, and food safety testing. Recent advancements in qPCR technology, such as Digital PCR and CRISPR-based qPCR, have further expanded its applications. Learn more about the origins and potential of qPCR in our latest blog post.
ChIP-seq, or chromatin immunoprecipitation sequencing, is a powerful tool used to study protein-DNA interactions in the genome.
We will explain what these factors are and how they are used to analyze ChIP-seq and ATAC-seq data
November is Epilepsy Awareness Month and organizations, researchers, journals and foundations around the world are taking this time to come together as a community and address how to best use our resources towards improving outcomes for epilepsy patients. There have been exciting advances recently in new target identification, animal research models, biomarker discoveries and stem cell therapies.
ATAC-seq, or assay for transposase-accessible chromatin sequencing, is a powerful tool used to study the accessibility of the genome.
DESeq2 is a popular and widely used package in the field of bioinformatics for the analysis of RNA-Seq data. It provides a more comprehensive view of gene expression compared to traditional microarray technology.
Next-generation sequencing (NGS) is a powerful tool used to generate high-throughput DNA sequencing data.
Pluto was excited to join many others at the 2022 Bio-IT World and featured in the Best of Show Awards Highlights New Products in Bio-IT.
Read more about how Pluto Biosciences spun out of the Wyss Institute for its collaborative bioinformatics platform
Cytokines are small proteins that play a crucial role in regulating the immune system, inflammation, and cell growth.
For decades, scientists have been trying to find cures for all the various cancers that plague humanity and have made incredible strides towards this goal. We currently have various treatments that are able to significantly prolong survival and in some cases completely treat the cancerous tumor. One of the major roadblocks in our ability to cure this disease is related to the incredible heterogeneity that exists within each tumor and each patient. Additionally, the way each organism responds to the tumor cells is also extremely varied placing a lot of pressure on clinicians and scientists to constantly adapt.
Press release on Pluto launching the cloud-based data management and analysis platform.
SAMtools is a software package for interacting with and processing next-generation sequencing data
Pluto, a biological data management platform stattup, was lauched from the Wyss Insitute at Harvard.
A great article by Lindsay Browne on how Pluto launched from teh Harvard's Wyss Institute to speed scientific discovery.
Motor neurons are important cells in our body that send signals to our skeletal muscle that allow us to do activities like walk, speak, swallow, and even breathe. Motor neuron diseases like amyotrophic lateral sclerosis (ALS) destroy motor neurons. When muscles don’t receive normal signals from our motor neurons, the muscles atrophy (weaken and shrink) and we lose the ability to do those activities over time.
Hello world! After six foundational months of work, we are humbled and proud to announce the launch of our company: Pluto Biosciences, Inc.
How effectively do the Moderna and Pfizer mRNA vaccines mount a response against the SARS-CoV-2 variants causing new waves of infections? This study measured antibody levels in serum and found that both provided strong protection against new variants.
In this blog post, we will walk through the steps of trimming RNA-seq data using popular software tools such as Trimmomatic and Cutadapt.
Mastering Key Skills and Coding Languages for Effective Analysis of Biological Data: A Guide to Bioinformatics Engineering