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Sequencing-based assays (Page 127)

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Explore curated data sets and assays

Sequencing-based assays (Page 127)

GSE84865: Ebola virus glycoprotein variant with increased infectivity for human cells dominated the 2013-2016 outbreak

GSE86064: Mandatory Role of HMGA1 in Human Airway Epithelial Normal Differentiation and Post-injury Regeneration

GSE83719: Transcriptome profiling of hematopoietic cells derived from human pluripotent stem cells

GSE83512: Transcriptome-wide analysis to determine miR-200a targets in melanoma cell lines

GSE84610 (human): CHD1 loss sensitizes prostate cancer to DNA damaging therapy by promoting error-prone double-strand break repair

GSE84620: Transcriptomic changes mediated by -amyloid in human aortic endothelial cells (HAOEC)

GSE84197: Benzotriazoles reactivate latent HIV-1 through inactivation of STAT5 SUMOylation (RNA-Seq)

GSE94999: H3B-8800, a novel oral splicing modulator, induces lethality in spliceosome mutant cancers [Nalm-6]

GSE84684: Dysregulated synaptic gene expression and axonal neuropathology in a human iPSC-based model of familial Parkinson's disease

GSE85417: Transcriptome of iPSC-derived Cerebral Organoids with Heterozygous Knockout in CHD8

GSE84666: Engineered human pluripotent stem cell-derived intestinal tissues with a functional enteric nervous system

GSE90683: Heterogeneity of neuroblastoma cell identity revealed by transcriptional circuitries

GSE83142: Identification of rare, dormant and therapy resistant stem cells in acute lymphoblastic leukemia

GSE84022: BCL6-centric reorganization of the genome during B cell affinity maturation

GSE109795: Gene expression in mature and immature human ES-derived beta cells, and sorted beta-cells from adult islets

GSE84694: Reprogramming of human stem cells towards a rejuvenated and transformation-resisting state by recoding a single nucleotide

GSE113861: Nascent RNA Sequencing after NMYC activation in SH-EP MYCNER cells

GSE84085: Next Generation Sequencing Facilitates Quantitative Analysis of Human Primary and Pluripotent Stem Cell-Derived Epicardial Cell Transcriptomes

GSE84712: RNA-seq of Human neural progenitor cells exposed to lead (Pb) reveals transcriptome dynamics, splicing alterations and Pb disease risk associations

GSE85133: Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas [RNA-seq]

GSE84135: The NFkB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells

GSE84188: Ebolavirus species associated with differential pathogenicity induce distinct host responses in human macrophages

GSE84730: Long non-coding RNA TYKRIL controls pericyte function and survival in the cardiovascular and central nervous system through regulation of p53 activity and PDGFR expression

GSE85461: Model systems of DUX4 expression recapitulate the transcriptional profile of FSHD cells

GSE84722: Integrative classification of human coding and non-coding genes based on RNA metabolism profiles

GSE85783: Laminin-guided highly efficient endothelial commitment from human pluripotent stem cells [Single Cell RNA-Seq]

GSE85493: Cell responses to dysregulated VZV-induced cell-cell fusion

GSE109870: transcriptome studies of BRD4 inhibitor BDF-1253 on renal clear carcinoma 786-O cells

GSE85474: RNA-dependent RNA polymerase sequence specificities of capsnatching viruses are tailored to aid viral replication

GSE85510: Major roles of cyclobutane pyrimidine dimers, nucleotide excision repair and ATR in the alternative splicing response to UV irradiation

GSE90069: Transcriptional signature of human mesoangioblasts from different fetal tissues.

GSE89049: Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation

GSE83115: Identification of Tissue-Specific Protein-Coding and Noncoding Transcripts across 14 Human Tissues Using RNA-seq

GSE87585: The Aneuploid Multiple Myeloma 3D Genome Reveals Spatial Genome Disorganization Associated with Copy Number Variations and Gene Expression

GSE90785: Reconstitution of the human pancreatic niche stimulates differentiation of hESCs into beta cells and reveals new signals for pancreatic endocrine cell maturation

GSE87495: DUX4-induced dsRNA and MYC mRNA Stabilization Activate Apoptotic Pathways in Human Cell Models of Facioscapulohumeral Dystrophy

GSE89729: Quantitative Analysis of PPARD Transcriptomes in Colon Cancer Cells by Next Generation Sequencing (NGS)

GSE85527: Partially exhausted CD8+ T cells are associated with clinically beneficial response to Teplizumab in new onset type I diabetes (single-cell RNA-seq of sorted CD8+ T-cells)

GSE86102: RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure by siRNA knockdown of Anillin [tpo8]

GSE116267: Global effects of SUPT4H1 RNAi on gene expression of HEK293 cells

GSE85531: Partially exhausted CD8+ T cells are associated with clinically beneficial response to Teplizumab in new onset type I diabetes (whole blood RNA-seq)

GSE106661: Inactivation of ARID1A-SWI/SNF Complex Alters Chromatin Compactness at Enhancer Regions and Affects Transcription of Key Tumor Signaling Circuitry [RNA-Seq]

GSE83717: Identification and validation of differentially expressed transcripts by RNA-Sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis

GSE89726: RNA Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs

GSE83849: Gene Expression Profiling Of TTLL12 Knocked Down Cell With Sendai Virus Treatment

GSE86237: Targeting Glioma Stem Cells through Combined BMI1 and EZH2 Inhibition [RNA-seq]

GSE87096: Methylome, hydroxymethylome, and integrative transcriptome profiling in human CRC tissue and paired normal tissues

GSE84133: A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure

GSE86103: RNA-Seq analysis of proliferating 4N and 2N RPE1 cells derived from single cell clones following inhibition of Aurora B to induce polyploidization [tpo10]

GSE138437: Sequencing of commercially-available pancreatic cancer cell lines reveals selective CYP3A5 overexpression among xenobiotic-metabolizing CYPs.

GSE84445: Transcriptomic profile of circulating memory T cells can differentiate between latent tuberculosis individuals and healthy controls

GSE85567: DNA methylation in lung cells is a key modulator of asthma endotypes and genetic risk [RNA-seq]

GSE86146: Single cell RNA-seq analysis of human germline cells and their niche cells

GSE84285: Genome-wide analysis of Dengue virus 2 infected cells

GSE129505: Transcriptional landscape of human myogenesis reavels a key role of TWIST1 in maintenance of skeletal muscle progenitors

GSE116266: Global effects of SUPT4H1 RNAi on gene expression of primary human fibroblasts

GSE84863: RNA sequencing of MDA-MB231 and U2OS cancer cell lines exposed to the alkylating agentmethyl methanesufonate (MMS)and classical chemotherapeutics

GSE84385: RNA-sequencing based transcriptome-wide expression profiling of Cynomolgus monkey and human IPSCs in vitro differentiated into endothelial cells

GSE86244: Early Chronological Aging in Human Adipose-Derived Stem Cells Marked by Distinct Transcriptional Regulation Compared to Differentiated Cells

GSE87540: Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq)

GSE130852: MCF-7 as a model for functional analysis of breast cancer risk variants

GSE86422: Airway epithelial cells from smokers treated with myo-inositol or placebo

GSE95077: Amiloride, an old diuretic drug, is a potential therapeutic agent for multiple myeloma

GSE86159: LINC00520 is Induced by Src, STAT3, and PI3K and Plays a Functional Role in Breast Cancer

GSE87237: Human nave pluripotent stem cells exhibit X chromosome dampening and X-inactivation (single cell RNA-Seq)

GSE119296: Whole genome transcriptomics of pre-access veins and hemodialysis arteriovenous fistula (AVF) samples from two-stage AVF patients with different maturation outcomes (matured vs. failed)

GSE85082: Control of gene expression in senescence through transcriptional read-through of convergent protein-coding genes [RNA-Seq PROLIF-SEN]

GSE87626: Interaction between mitoNEET and NAF-1 in cancer cells

GSE86001: Binding to SMN2 pre-mRNA-Protein complex elicits specificity for small molecule splicing modifiers

GSE86452: CD161+ Tconv and Treg share transcriptome and display a migratory phenotype which is modified at the inflamed site

GSE103071: RNA-seq analysis of melanoma and carcinoma cells expressing FOXQ1

GSE87559: Pharmacological Induction of a Progenitor State for the Efficient Expansion of Primary Human Hepatocytes

GSE87668: p53 activity results in DNA replication fork processivity

GSE86518: Genome-wide mRNA expression in human glioblastoma cells and glioblastoma stem cells expressing or not Omomyc

GSE93783: Cytotoxic Vibrio T3SS1 Rewires Host Gene Expression to Subvert Cell Death Signaling and Activate Cell Survival Networks

GSE89774: Modulation of nonsense-mediated decay by rapamycin

GSE103630: Expression changes in melanoma cell lines pre MAPKi treatment vs. post-MAPKi resistance (RNA-seq_CellLine.batch2)

GSE87254: Trac-looping measures genome structure and chromatin accessibility