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Sequencing-based assays (Page 128)

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Explore curated data sets and assays

Sequencing-based assays (Page 128)

GSE85941: Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [RNA-seq]

GSE87360: Morphological and molecular characterization of human dermal lymphatic collectors

GSE86202: Analyzing the interactions of mRNAs, miRNAs, lncRNAs and circRNAs to predict competing endogenous RNA networks in glioblastoma

GSE88848: Appropriately Differentiated ARPE-19 Cells Regain a Native Phenotype and Similar Gene Expression Profile

GSE115168: ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin

GSE94437: Comprehensive analysis of gene expression in human retina and supporting tissues

GSE89866: Moderate blast exposure alters gene expression and levels of amyloid precursor protein

GSE89189: Generation of human microglia-like cells to study neurological disease

GSE89334: Discovery of Drug Candidates that Inhibit and Eliminate Zika Virus Infection in Fetal and Adult Brain

GSE89322: Single Cell RNA-Seq Analysis Reveals Fate Decision of Human Pre-cDC Determined by Transcription Factor Competition

GSE89888: RNA-seq analysis of ESR1 mutations in T47D and MCF7 cell lines

GSE98852: Single cell RNA sequencing of peanut-responsive T cells

GSE89942: An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [whole transcriptome RNA-seq]

GSE95089: RNA-seq analysis revealed aberrant gene expression in motor neurons derived from ALS patient iPSCs bearing SOD1+/A272C mutation

GSE89478: Oncolytic reactivation of KSHV as a therapeutic approach for primary effusion lymphoma: RNA-sequencing of PEL cell lines during KSHV reactivation

GSE94989: Differential gene expression in Jagged1 treated human dental pulp cells.

GSE93813: Exploiting Prmt5-orchestrated intron detention signatures to treat splicing-addicted malignant glioma tumors

GSE128880: Subcellular RNA fractions of primary human fibroblasts infected with the HSV-1 delta-ICP27 mutant

GSE90164: Nm-seq finds thousands of modified 2-O-methylation sites in mRNA with base precision

GSE94150: Memory CD4+ T cell subsets show differential responses to HIV latency reversing agents [LRA stimulated]

GSE89940: An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [polyA RNA-seq]

GSE90682: Mutations in EBF3 disturb transcriptional profiles and cause intellectual disability, ataxia and facial dysmorphism

GSE97979: Perturbation-response genes reveal signaling footprints in cancer gene expression

GSE89127: Suppression of adaptive responses to targeted cancer therapy by transcriptional repression [RNA-seq]

GSE99400: RNA-seq of GM15850 and GM15851 cells treated with synthetic transcription elongation factors.

GSE89957: Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular

GSE90455: Genetic determinants and epigenetic effects of pioneer factor binding [RNA-seq]

GSE126865: Gene expression in skeletal muscle in older individuals subject to ten days of complete bed rest.

GSE92578: Characterization of sperm lncRNA and its differently expression in the sperm of asthenozoospermic patients

GSE89368: DDX54 regulates transcriptome dynamics during DNA damage response [RNA-seq2]

GSE93321: Single cell gene expression in Dlxi1/2b::eGFP+ cells before and after migration, 2 weeks

GSE94035: Neuroblastoma cells undergo transcriptomic alterations during dissemination into the bone marrow and subsequent tumor progression

GSE92651: Akt Activation Mediates Acquired Resistance to Fibroblast Growth Factor Receptor Inhibitor BGJ398

GSE96634: Abnormal RNA splicing and genomic instability after induction of DNMT3A mutations by CRISPR/Cas9 gene editing [RNA-Seq]

GSE106503: RNA-seq of cancer-associated fibroblasts (CAF) treated with PBS or extracellular vesicles (EV) from MCF10A or MDA-MB-231 cells

GSE96642: Generation of mature lung alveolar epithelial cells from human pluripotent stem cells

GSE92744: Agonistic targeting of TLR1/TLR2 induces p38 MAPK-dependent apoptosis and NfkB-dependent differentiation of AML cells

GSE93562: Gene Expression of Breast Cancer Cell Lines Across Biomaterial Platforms

GSE95057: Exploring the landscape of transcriptome 3 end diversity (TREND) by applying TRENDseq

GSE95630: Tracing the temporal-spatial transcriptomic landscapes of the human fetal digestive tract by single cell RNA-seq analysis [fetal tissues]

GSE94013: Canonical and non-canonical regulatory roles of androgen receptor variant 7 in prostate cancer

GSE99317: Maturing an Enteric Nervous System in Human Intestinal Organoid-derived Tissue-Engineered Small Intestine

GSE132704: Timecourse of gene expression in HeLa cells (parental cells and clonal knockouts of MED12 and MED24) following induction by TNFa or IL-1b

GSE95153: COMBINING BET AND MEK INHIBITORS SYNERGISTICALLY TARGETS NRAS MUTANT MELANOMA

GSE93265: Human monocytes exhibit a functional and transcriptional reprogramming during Acute-on-Chronic-Liver-Failure with a key role for IL-10

GSE112155: RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients

GSE103547: Defining the developmental stage of human podocytes in kidney organoids derived from pluripotent stem cells

GSE90734: Primate-specific gene TMEM14B promotes cortical expansion and folding

GSE127959: Absence of NKG2D ligands defines human leukaemia stem cells and mediates their immune evasion

GSE92739: EWS-FLI1 represses Rho-actin signaling via MRTFB/YAP-1/TEAD perturbation in Ewing Sarcoma [RNA-Seq]

GSE90748: Mycobacterium bovis Bacillus Calmette-Guerin (BCG) reprograms melanoma microenvironment to promote antitumor T cell responses

GSE93657: A recessive p.Cys120Arg ENPP1 Mutation Causes a Dyschromatosis Universalis Hereditaria by Altering Melanogenesis

GSE90728: Tissue-resident memory features are linked to the magnitude of cytotoxic T cell responses in human lung cancer [NSCLC]

GSE125866: Long non-coding RNA expression profile associated with malignant progression of oral submucous fibrosis

GSE93991: The transition from proliferation to quiescence in glioblastoma stem-like cells requires Ca2+ signaling and mitochondria remodeling

GSE92839: Maturation of human iNSCs

GSE93593: Single cell RNAseq characterization of cell types produced over time in an in vitro model of human inhibitory interneuron differentiation.

GSE111437: X-Ray induced DNA-Hydroxymethylation changes

GSE90781: YEATS2 Links Histone Acetylation to Tumorigenesis of Non-small Cell Lung Cancer

GSE121112: Reprogramming of dermal papilla cell intact gene signature with 3D culture and Lef-1 overexpression

GSE90876: Transcriptomic Profiling of Developing Human Paraxial Mesoderm from 4.5-5 Weeks of Gestation Human Embryos

GSE93675: Effect of ROQUIN2(Y691F) expression on mRNA levels upon BCR stimulation

GSE101738: Measuring the effect of MYC on transcription during the DNA double-strand break response by RNA-seq of newly synthesized transcripts

GSE94588: PARP3 is a promoter of chromosomal rearrangements and limits G4 DNA

GSE90762: Proteolytic cleavage by taspase1 and the regulation of the stability of MLL1

GSE94888: FUS mutant human motoneurons transcriptome analysis reveals altered pathways and impairment of microRNA function

GSE92387: Gene expresison studies of lupus and healthy B cell subsets through RNA sequencing

GSE120364: Next Generation Sequencing Facilitates Quantitative Analysis of Gene expression profile in CD8+ T cells with TOX-overexpression

GSE92506: Time series RNA profiling of endotheilal cells in response to atheroprone and atheroprotective flows

GSE93705: Next Generation Sequencing Facilitates Quantitative Analysis of Human Pluripotent Stem Cell-Derived Endocardial-like And Primary Cardiac Endothelial Cell Transcriptomes

GSE90834: Systemic human ILC precursors provide a substrate for tissue ILC differentiation

GSE95297: Dynamics of HIV Latency and Reactivation in a Primary CD4+ T Cell Model

GSE96682: Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR+ Populations with Stem Cell Properties

GSE146117: A modular differentiation system maps multiple human kidney lineages from pluripotent stem cells [RNA-Seq]

GSE93681: CRISPR/Cas9 Screens Reveal Epstein-Barr virus Synthetic Lethal Targets

GSE92459: Characterizing the epigenome of glioma stem cells (RNA-Seq)

GSE94120: Transcriptome-wide response to synthetic chromatin protein PcTF

GSE95189: The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition [RNA-Seq]