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Sequencing-based assays (Page 125)

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Explore curated data sets and assays

Sequencing-based assays (Page 125)

GSE73565: Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling

GSE79666: Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease

GSE75489: Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during Epithelial-to-Mesenchymal Transition [ESRP KD]

GSE73696: Effects of NSD2 depletion on gene expression and H3K36me2 in a lung cancer cell line

GSE82110: Acriflavine inhibits the epithelial-to-mesenchymal transition in vitro in liver and pancreatic cancer cells (part of study on HepG2)

GSE81498: Multiple mechanisms disrupt let-7 miRNA biogenesis and function in neuroblastoma [longRNA]

GSE72696: Integrative fine-mapping of regulatory variants and mechanisms at coronary artery disease loci

GSE73784: Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations [RNA-seq]

GSE71858: Fixed single-cell transcriptomic characterization of human radial glial diversity

GSE77784 (human): MOF acetyl transferase regulates transcription and respiration in mitochondria

GSE73941: Reversible and Dynamic m1A Methylation in the Human Transcriptome

GSE73929: Genome-wide MAF1-dependent regulation of RNA polymerase III transcription [RNA-Seq]

GSE74324: BRD4 connects enhancer remodeling to senescence immune surveillance (RNA-seq)

GSE71972: Histamine footprint on the human exercise transcriptome

GSE73471: The bromodomain protein BRD4 regulates splicing during heat shock

GSE74246: Unstranded RNA sequencing data

GSE73663: Development of Pathway Preferential Estrogens Affording Beneficial Metabolic and Vascular Actions without Reproductive Tissue Stimulation in Mice

GSE73708: Gene expression analysis of human hepatocellular cancers

GSE72820: Gene expression analysis of human adenomas.

GSE81513: Splicing towards noncoding isoforms in colorectal carcinoma is associated with tumor hypoxia and the DNA damage response

GSE75299: Expression changes in Melanomas pre MAPKi treatment vs. on MAPKi treatment (RNA-seq)

GSE148978: An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Human scRNAseq)

GSE73999: P120-catenin dependent glioma-cell networks drive growth and diffuse brain infiltration

GSE74053: RNA-seq transcriptional profiling in human primary fetal and adult CD34+ hematopoietic stem/progenitor cells (HSPCs) erythroid progenitor cells (ProEs)

GSE72713: Transcriptome analysis of eosinophilic and noneosinophilic chronic rhinosinusitis with nasal polyps reveals distinct lncRNA expression profiles

GSE75643: Massive reshaping of genome - nuclear lamina interactions during oncogene induced senescence (RNA-seq)

GSE72483: ROR- drives androgen-receptor expression and represents a therapeutic target in castration-resistant prostate cancer

GSE74220: Transcriptome response to 4h IL-1b stimulation of primary chondrocytes

GSE76081: Mesenchymal Stromal Cells undergo major changes during therapeutic application

GSE73213: Promoter H3K4 methylation reveals the dynamic reinforcement of activation-induced pathways in human CD4 T cells with differential kinetics in nave and memory cells (RNA-Seq)

GSE72821: High-throughput RNA-sequencing of human macrophages infected with Mycobacterium abscessus Smooth and Rough variants

GSE75440: Gene expression profiles in NORAD knockout and PUMILIO overexpressing cells

GSE72956: Transcriptomic and Epigenetic analysis of cell line derivatives from H2087 and HCC1954 cell lines

GSE74383: Targets of ROR2 overexpression in MCF-7 cells revealed a differentially regulated module of non-canonical WNT signaling pathway

GSE74289: Improved LCL to iPSC reprogramming: RNA Analysis of LCLs, reprogrammed iPSCs, and differentiated NSCs reveal potential regulatory and functional processes involved in these cellular transitions.

GSE103843: Genome-wide profiling of siRNA targeting EWS-FLI1 in TC32 Ewing sarcoma cell line

GSE75859: Activation of Wnt/beta-catenin in Ewing sarcoma cells antagonizes EWS/ETS function and promotes phenotypic transition to more metastatic cell states

GSE74450: Direct Isolation and Characterization of Human Nephron Progenitors.

GSE74516: RNA-seq Profiles in Transcription elongation factors are in vivo-specific cancer dependencies in glioma

GSE83547: Lipid catabolism inhibition sensitizes prostate cancer cells to antiandrogen blockade

GSE74557: Adaptive chromatin remodeling in glioblastoma stem cell plasticity and drug tolerance

GSE75935: Combined Genome and Transcriptome Sequencing to Identify Allelic Selection in Epithelial Ovarian Cancer

GSE75711: Generation of nephronal cells from human pluripotent stem cells via renal-vesicle formation

GSE73211: Comparing isogenic pairs of hESC and hiPSC lines reveals genetic background and reprogramming method as primary sources of transcriptional variation

GSE74620: ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence [RNA-Seq]

GSE75035: Lipid degradation promotes prostate cancer cell survival

GSE75515: Gene expression analysis of human haploid cells (HAP1) depleted of SMARCB1 and SMARCA4

GSE74698: Developing a Novel Two-Dimensional Culture System to Enrich Human Prostate Luminal Progenitors That Can Function as a Cell of Origin for Prostate Cancer

GSE76129: ZNF599 and DNMT3A coordinately control nuclear envelope organization by repression of SUN4 expression

GSE75906: Small molecules modulate chromatin accessibility to promote NEUROG2-mediated fibroblast-to-neuron reprogramming [RNA-seq]

GSE75530: Human RNase L Tunes Gene Expression by Selectively Destabilizing the MicroRNA-Regulated Transcriptome

GSE74927: Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number variations, PIK3CA mutation, and pathway signatures. [RNA-Seq]

GSE81507: Post-transcriptional manipulation of TERC reverses molecular hallmarks of telomere disease

GSE80727: Utilizing single-cell variations to reveal environment-dependent tuning of network connectivity in human macrophages (RNA-Seq, CAGE and ChIP-Seq)

GSE71519: Synergistic gene expression signature observed in TK6 cells upon co-exposure to UVC-irradiation and protein kinase C-activating tumor promoters, a time course study (study 1/2)

GSE102860: Next Generation Sequencing of Lung Primary Fibroblast Responding to Eosinophil-Degranulation Products

GSE81062: Targeting MTHFD2 in Acute Myeloid Leukemia

GSE77913: Cajal bodies are linked to genome conformation [RNA-Seq]

GSE76947: A novel compound that blocks HIV-1 replication inhibits the splicing regulatory function of SRSF10

GSE76098: Connexin 32-mediated cell-cell communication is essential for hepatic differentiation from human embryonic stem cells

GSE77538: Genome-wide expression profile in FH-deficient (UOK262) vs FH-competent (UOK262pFH) human cells derived from metastatsis to the mediastinum of a HLRCC patient

GSE76421: JAG1 Mediated Notch Signaling Regulates Secretory Cell Differentiation of the Human Airway Epithelium

GSE77938: Transcriptome profiling of human keratoconus corneas through RNA sequencing identifies collagen synthesis disruption and downregulation of core elements of TGF-, Hippo, and Wnt pathways

GSE81233: Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos

GSE76683: RNA-seq expression data from FL-HSPCs after HOXA7 knockdown

GSE76661: RPA interacts with HIRA and regulates H3.3 deposition at gene regulatory elements in mammalian cells

GSE76173: Comparative transcriptomic analysis of human and Drosophila extracellular vesicles reveals extensive conservation

GSE96860: Enhancer Transcription Reveals Subtype-Specific Transcription Programs Controlling Breast Cancer Pathogenesis [RNA-Seq]

GSE80153: Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma [RNA-seq]

GSE101353: Exaggerated BMP4 signalling alters human airway basal progenitor cell differentiation to cigarette smoking-related phenotypes [RNA-Seq]

GSE77382: Arnica montana stimulates extracellular matrix gene expression in human macrophages differentiated to wound-healing phenotype.

GSE76240: DNA breaks and chromatin structural changes enhance the transcription of Autoimmune Regulator target genes [RNA-Seq]

GSE77992: Next Generation Sequencing Facilitates Quantitative Analysis of HCC cells transfected with NCsiRNA or CDCA8siRNA

GSE76998: Transcriptomic Dynamics during Differentiation Process of Human Pluripotent Cells into Hepatocyte-like Cells

GSE76743: Implication of Long noncoding RNAs in the endothelial cell response to hypoxia revealed by RNA-sequencing.

GSE78195: Next Generation Sequencing Facilitates Quantitative Analysis of colorectal cancer cells transfected with NC siRNA or RPL9 siRNA

GSE76326: Role of OSGIN1 in Mediating Smoking-induced Autophagy in the Human Airway Epithelium [RNA-Seq]

GSE80136: Whole transcriptome splicing analysis in isogenic lung epithelial and adenocarcinoma cell lines with or without a recurrent splicing factor mutation, U2AF1 (S34F)