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Sequencing-based assays (Page 118)

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Explore curated data sets and assays

Sequencing-based assays (Page 118)

GSE145444: COP1 depletion and LPS treatment of microglia in vitro

GSE145446: Long term effects of COP1 deletion in microglia in vivo

GSE153764: ATF4 regulates MYB to increase g-globin in response to loss of -globin [RNA-seq]

GSE154541: RNA seq analysis of Nfe2 expressing 4T1 and TS/A cells

GSE146476: Intestinal region-specific Wnt signalling profiles reveal interrelation between cell identity and oncogenic pathway activity in cancer development

GSE154843: Stromal upregulation of SOX2 promotes tumorigenesis through the generation of a SFRP1/2-expressing cancer-associated fibroblast population [RNA-seq]

GSE156387: KDM5A and PHF2 positively control expression of pro-metastatic genes repressed by EWS/Fli1, and promote growth and metastatic properties in Ewing Sarcoma

GSE153454: Transcriptome Analyses in BV2 microglial cells following treatment with amino-terminal fragments of apolipoprotein E

GSE147495: IL-33-PU.1 transcriptome reprogramming drives functional state transition and clearance activity of microglia in Alzheimers disease

GSE154406: Autonomous neutrophil ageing in the lung governed by the pulmonary microbiome

GSE153831: BRAFV600E or mutant MAP2K1 human CD34+ cells establish Langerhans cell-like histiocytosis in immunodeficient mice

GSE154556: Epigenetic modification of the COX-2/PGE2 pathway modulates macrophage phenotype and cell-targeted manipulation improves diabetic tissue repair

GSE146928: Early fate defines microglia and non-parenchymal brain macrophage development

GSE151071: Control of gene expression mRNAN6-methyladenosine in pro-B cells

GSE151225: CRISPR-GEMM pooled mutagenic screening identifies KMT2D as a major modulator of immune checkpoint blockade (RNA-Seq)

GSE151776: Microphysiological System Modeling of Ochratoxin A-Associated Nephrotoxicity

GSE147295: BMP signaling: at the gate between activated melanocyte stem cells and differentiation [RNA-Seq]

GSE146522: To determine the effects of non-cholesterol based sterol enriched diets on liver gene expression

GSE153807: Single nucleus RNA-Seq is not suitable for detection of microglial activation genes in humans

GSE154410: Sperm long RNA sequencing 14 days after dexamethasone injection

GSE156147: Classifying polycyclic aromatic hydrocarbons by carcinogenic potency using in vitro biosignatures

GSE146523: The effects of liver specific deletion of Dhcr7 on gene expression

GSE153873: An integrated multi-omics approach identifies epigenetic drivers associated with Alzheimers disease [RNA-Seq]

GSE157433: RNA-seq of Runx3 cKO SFZ/DZ chondrocytes.

GSE150289: Single-cell analysis uncovers inter- and intra-organ fibroblast heterogeneity and provides criteria for fibroblast identification and discrimination from vascular mural cells [bladder]

GSE153138: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Mettl5-/- brain Transcriptomes

GSE153822: Copa mutation activates STING and perturbs thymocyte development by increasing type I interferons in the thymus.

GSE146405: RNA-Seq Analysis of Wild Type and Scn5a/+ left ventricle at dark:light and light:dark phase transitions

GSE156159: Inflammasomes within hyperactive dendritic cells stimulate T cell mediated anti-tumor immunity

GSE156138: Uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles

GSE146455: Deficiency of STING-signaling leads to neurogenic abnormalities and Autistic-Like Behaviors in the embryonic cortex [bulk RNA-seq]

GSE153010: Sprr2f protects against renal injury by decreasing the level of reactive oxygen species in female mice

GSE146557: RNA sequencing of mouse CT26 knockout Pd-l1 cells rescued with WT or K262Q Pd-l1

GSE145506: GlioM&M: Web-based tool for studying circulating and infiltrating monocytes and macrophages in glioma

GSE154572: Loss of PRC2 subunits primes lineage choice during exit of pluripotency

GSE156152: The Influenza non-structural protein 1 (NS1) operates targeted mechanisms to suppress immune gene expression.

GSE151821: RUNX2 is a dependency factor in immature and KMT2A-rearranged T-cell acute lymphoblastic leukemia [KARPAS-45 AI-10-104 RNA-seq]

GSE146922: mTORC1 and B cell survival signal regulate formation of memory precursors in the germinal center [1]

GSE146518: Fighting against promoter DNA hyper-methylation: Protective histone modification profiles of stress-resistant intestinal stem cells [RNA-Seq]

GSE153830: Transcriptome changes in MCF-7 and T47D breast cancer cells after four day incubation in glucose deprived medium and beta-hydroxybutyrate

GSE151931: Microbiota-driven arginase 1 expression impedes the resolution of intestinal inflammation

GSE151151: Paneth cell-derived intestinal luminal lysozyme shapes mucolytic microbiota and controls mucosal inflammatory tone

GSE154813: Transcriptome and epigenome diversity and plasticity of muscle stem cells following transplantation

GSE154437: RNA-Seq of B6/CAST crosses in major forebrain cell types (bulk)

GSE134817: Promoter activity profiling reveals on- and off-target transcriptional responses to drug treatment

GSE134308: Identification of miR-194-5p target genes in gastric cancer

GSE145642: CAR T cells targeting uPAR are effective senolytics

GSE157205: Heart failure impairs the mechanotransduction properties of human cardiac pericytes

GSE153819: Reconstitution of prospermatogonial specification in vitro from human induced pluripotent stem cells

GSE71325: A Surveillance System of Active Enhancers by a RACK7-histone Demethylase Complex (RNA-Seq I)

GSE148897: Role of phosphorylated Gonadotropin-Regulated Testicular RNA Helicase (GRTH/DDX25) in the Regulation of Germ Cell Specific mRNAs in Chromatoid Bodies during Spermiogenesis

GSE147007: LOX inhibition (BAPN treatment) attenuates satellite cell differentiation

GSE145556: Integrative epigenomic and Master Regulator analysis of adult glioblastoma - mouse RNAseq experiments

GSE154460: CENP-A overexpression promotes aneuploidy and karyotypic heterogeneity

GSE145665: Genome-wide maps of liver in high-fat fed mice treated with kaempferol

GSE157012: SMARCB1 loss interacts with neuronal differentiation state to block maturation and impact cell stability

GSE131525: A composite immune signature parallels disease progression across T1D subjects (RNA-Seq Cohort 0 Cell Sorted)

GSE68378: Ambient O2 pressure induces NF-kB1/RelA related inflammatory response in human lung epithelial cells in vitro

GSE149941: LKB1 expressed in dendritic cells governs the development and expansion of thymus-derived regulatory T cells

GSE147450: SIRP- triggers tolerogenic training of resident alveolar macrophages after inflammation, leading to immune paralysis and increased susceptibility to secondary pneumonia

GSE147800: Protein Kinase / suppresses liver cancer by repressing autophagy and oxidative phosphorylation in hepatocytes [DH]

GSE146595: Altered regional progenitor dynamics in the neocortexof a BBSOA disease mouse model

GSE145662: Transcriptomics revealed the putative mechanism underlying the impact of HFL1 fibroblasts with overexpression of GALC on LoVo cell

GSE145704: ANP32E Restricts Widespread Chromatin Accessibility Through Regulation of H2A.Z [RNA-seq]

GSE149859: Single-cell analysis uncovers inter- and intra-organ fibroblast heterogeneity and provides criteria for fibroblast identification and discrimination from vascular mural cells (Colon)

GSE145792: Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [RNA-seq]

GSE156985: Gene expression profiles of CD105pos and CD105neg cancer-associated fibroblasts (CAFs) from KPC mice

GSE145839: Targeted deletion of astrocytic Nhe1 stimulates Wnt/-catenin-mediated BBB repair and angiogenesis after ischemic stroke

GSE157223: An integrative multiomic network model links the canonical lipid metabolism pathway to glucose regulation in coronary artery disease

GSE148087: Lack of NFATc1 SUMOylation prevents autoimmunity and alloreactivity

GSE145730: Topoisomerase 3bis essential for neuronal activity-dependent transcription, neurogenesis, and synaptic and behavioral neuroplasticity

GSE146526: Microglial transcriptome of Maternal Immune Activation model at different developmental Stages and after microglia repopulation

GSE156102: Evolutionarily selected overexpression of the cytokine BAFF enhances mucosal immune response against P. falciparum

GSE157275: Transcriptome Analysis of Wild Type and HMGB1 knock-out iSLK BAC16 cells

GSE156461: Next Generation Sequencing Quantitative Analysis of altered expression of genes in lncRNA ELNAT1 knockdown bladder cancer cells

GSE154094: Synergistic alterations in multilevel chromatin structure anchor dysregulated genes in small cell lung cancer

GSE145820: Structural cells are key regulators of organ-specific immune response

GSE156729: High-throughput sequencing of OS cells treated with activated compound B5.