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Sequencing-based assays (Page 41)

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Explore curated data sets and assays

Sequencing-based assays (Page 41)

GSE125616: Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation embryo

GSE127916: S6K2 IS A NOVEL TARGET IN MAPKi-RESISTANT NRAS-MUTANT MELANOMA

GSE78003: Multivalent binding of PWWP2A to H2A.Z-marked transcriptional active chromatin regulates mitosis and organ development [RNA-seq]

GSE81367: Myostatin inhibition prevents skeletal muscle pathophysiology in Huntingtons disease mice.

GSE77010: The miR-17~92 microRNA cluster is a global regulator of tumor metabolism

GSE73352: Dual function of Med12 in PRC1-dependent gene repression and ncRNA-mediated transcriptional activation

GSE148234: RNAseq of CD8+ T cells memory subsets in human peripheral blood

GSE156708: FBXO11 is a candidate tumor suppressor in the leukemic transformation of myelodysplastic syndrome

GSE98710: An in vitro human liver model by iPSC-derived parenchymal and non-parenchymal cells

GSE77453: Isoform switch of TET1 regulates DNA demethylation and mouse development

GSE105095: Human CXCR5+CD45RA-CD8+ T cells subset in follicular lymphoma

GSE88953: Impact of hypothermic preservation of mouse kidney resident immune cells

GSE104887: N-cadherin expressing bone and marrow stromal progenitor cells maintain reserve hematopoietic stem cells

GSE72537: Partial loss of Rpl11 in adult mice recapitulates Diamond-Blackfan anemia (DBA) and promotes lymphomagenesis

GSE141535: Transcriptome profile of Primary Human Lung Fibroblasts (Cystic Fibrosis vs. Non-Cystic Fibrosis) [2D]

GSE136809: Inactivation of the nuclear interacting SET domain protein 1 (NSD1) impairs GATA1-regulated erythroid differentiation and causes erythroleukemia. KO experiement, mRNASeq whole bone-marrow.

GSE134770: Expression profiles of satellite cells and alpha7Sca1 cells in mdxITGAM-DTR mice

GSE120395: Regulatory T cell depletion promotes oncogenic Kras driven pancreatic tumorigenesis.

GSE77383: Transcriptomic profiling discloses molecular and cellular events related to neuronal differentiation in SH-SY5Y cells

GSE73357: Heterogeneous ribosomes exist and selectively translate distinct subpools of mRNAs in stem cells

GSE115831: Pancreatic cancer-derived exosomes induce apoptosis of T lymphocytes through the p38 MAPK signal transduction pathway

GSE76838: Targeted deletion of circadian clock gene Arntl in the nephron results in dysregulation of diverse metabolic pathways

GSE76749: The Histone Methyltransferases MLL1 and DOT1L Cooperate with Meningioma-1 to Induce AML [Mouse Mll1 ko RNA-seq]

GSE77081: Transcriptome in control, Fzd3 and Celsr3 mutant embryonic mouse cortex

GSE76608: Expression profiling of MCF-7 cells with 10nM treatment of TCDD

GSE92322: circRNA-sequencing

GSE130430: The Developmental Heterogeneity of Human Natural Killer Cells Defined by Single-cell Transcriptome

GSE130542: Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replicaion Timing and Chromatin Compartment (RNA-Seq).

GSE131411: Whole blood transcriptome analysis of Septic shock and Cardiogenic shock patients over one week of ICU stay

GSE79147: IGF2BP3 controls cancer cell invasiveness by modulation RISC function

GSE76647: The effect of Foxc1 deficiency on undifferentiated and differentiated human primary keratinocytes

GSE77997: Quantitative Analysis of Notch mutant (Notch1&2-null, Psen1&2-null, RBPjk-null) and wild-type hair follicle transcriptomes by NGS

GSE78747: GRN knockout, sorted brain cells

GSE76279: CXCR5+ Follicular Cytotoxic T cells Control Viral Infection in B Cell follicles

GSE79183: Changes in RNA expression in human oral cavity carcinoma cells as a result of LDB1 reduction

GSE76752: Transcriptome profiling in knock-in mouse models of Huntington's disease. [gonadal adipose mRNA]

GSE76565: Characterization of transcriptomic profile of ulcerated and intact stomach epithelium

GSE110999: RNA sequencing of B cell subsets (CD11c hi IgD+ B cells, CD11c hi IgD- B cells, Memory B cells and Nave B cells) from healthy subjects and subjects with Systemic lupus erythematosus (SLE) or Rheumatoid arthritis (RA)

GSE73381: Single cell RNA-Seq of Hira-KO and control MII oocytes [Zp3-Cre]

GSE148263: The ubiquitin ligase TRIM37 controls cancer-specific vulnerability to PLK4 inhibition

GSE110678: Genome-wide effect of constitutive IFN-signaling

GSE141885: RNAseq of cecum content of gnotobiotic mice

GSE77323: p62, upregulated during preneoplasia, induces hepatocellular carcinogenesis by maintaining survival of stressed HCC-initiating cells

GSE109405: Substrate stiffness effects on mRNA and lncRNA expression in mouse embryonic cardiomyocytes

GSE45684: RNA-seq alignment to individualized genomes

GSE76771: Transcription factor ATF4 directs basal and select gene expression in the unfolded protein response and cholesterol metabolism in liver

GSE120380: RNA-seq data of human T cells treated with decidual cell conditioned medium

GSE144265: Next generation sequencing comparing effects of FFSS, FAK inhibitor and FAK gene deletion. [FFSS]

GSE77441: ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells (RNA-seq)

GSE148336: Molecular mechanisms for Krppel-like factor 13 actions in hippocampal neurons [RNA-seq]

GSE79044: Dynamic gene regulatory networks of human myeloid differentiation [RNA-seq]

GSE112206: Intratumoral CpG-B promotes anti-tumoral neutrophil, cDC, and T cell cooperation without reprograming tolerogenic pDC

GSE73436: Chronic Activation of 2 AMPK Induces Obesity and Reduces Beta Cell Function

GSE72664: Sexual Divergence in Microtubule Function: The Novel Intranasal Microtubule Targeting SKIP Normalizes Axonal Transport and Enhances Memory

GSE78040 (human): Reversible methylation of m6Am in the 5 cap controls mRNA stability

GSE109835: RNA-seq analysis of tissues from PKCepsilon defiient mice

GSE131025: 3D genome architecture orchestrates activity-dependent gene expression in neurons

GSE77351: Deep transcriptome analysis of mouse embryonic fibroblast following simultaneous overexpression of Stella, Oct4 and Nanos2 (SON)

GSE78968: Effective Detection of Variation in Single Cell Transcriptome using MATQ-seq

GSE79203: Transcriptomic analysis of liver of WT and p21KO mice upon 24h fasting

GSE130407: Wnt5a and its downstream transcription factor Stat3 are therapeutic targets for diffuse intrinsic pontine gliomas

GSE72724: An autoregulatory enhancer controls mammary-specific STAT5 functions

GSE99577: Lipid signaling during neuronal degeneration in KA-treated mice

GSE97925: Western diet triggers NLRP3-dependent persistent functional reprogramming of myeloid cells [RNA-Seq]

GSE76717: RNA Expression Profile of Calcified Bicuspid, Tricuspid and Normal Human Aortic Valves by RNA Sequencing [TAV]

GSE77482: Pin1 is required for sustained B cell proliferation upon oncogenic activation of Myc

GSE129593: Alterations of mRNAs in NIH/3T3 cells overexpressing BPV-13 E6

GSE78273: Transcriptome profiling in knock-in mouse models of Huntington's disease (liver_mRNA).

GSE78801: Heterotypic nucleosomes and PRC2 drive DIPG oncogenesis

GSE79013: RNA sequencing identifies differentially expressed genes in adult left ventricles following in utero caffeine exposure during embryonic day 6.5-9.5

GSE79221: Regulation of T-cell receptor signaling induced gene expression by the zinc finger transcription factor Ikaros.

GSE76688: G-quadruplex structures mark human regulatory chromatin

GSE131526: A composite immune signature parallels disease progression across T1D subjects (RNA-Seq Cohort 0 WB)

GSE144098: Sexual Dimorphism in Cardiac Transcriptome Associated with a Troponin C Murine Model of Hypertrophic Cardiomyopathy

GSE77950: Long Non-coding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity

GSE79244: RNA-Sequencing of Klf6 silenced oligodendrocytes

GSE76837: Effects of in vivo expansion of mouse embryonic stem cells

GSE100276: Epigenetic memory of obesity predisposes to colorectal cancer