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Sequencing-based assays (Page 42)

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Explore curated data sets and assays

Sequencing-based assays (Page 42)

GSE77137: An evolutionarily conserved function of the pre-mRNA splicing regulator TNPO3 for T cell development

GSE74278: Transposable elements and their KRAB-ZFP controllers regulate gene expression in adult tissues

GSE77221: The mouse microbiome is required for sex-specific diurnal rhythms of gene expression and metabolism

GSE84706: Experimental validation of candidate regulators of KRAS transcriptional components.

GSE73977: Nuclear retention of mRNA in mammalian tissues

GSE77140: Gene expression profiles of rescue with wild type or SUMO double mutant TRIM24

GSE84776: Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours [RNA-seq]

GSE86591: Transcriptome analysis of Listeria monocytogenes infected bone marrow derived macrophages with or without DEAD-box helicase DDX3X

GSE78752: Transcriptome of liver tissue in 5 week old Stabilin-1 knock-out mice

GSE78845: Single cell transcriptome analysis of mouse thoracic sympathetic ganglia

GSE73438: Expression Profiling of Livers From Female FC-ob Mice and MRKO-ob Mice

GSE84814: Glucose inhibits cardiac maturation through nucleotide biosynthesis

GSE78105: Pathogenicity of genomic duplications is determined by formation of novel chromatin domains (neo-TADs) (RNA-seq)

GSE105406: PTCD1 is required for 16S rRNA maturation complex stability and mitochondrial ribosome assembly

GSE143597: Transcriptome response of lung in response to A. baumannii infection

GSE78514: Reduced expression of ABCB4 is linked to an inflammatory phenotype of biliary atresia in mice and men

GSE100216: PKC-LSD1-NF-B Signaling Cascade Is Crucial for Epigenetic Control of the Inflammatory Response [RNA-Seq]

GSE78936: Systematically characterizing dysfunctional long intergenic non-coding RNAs in multiple brain regions of major psychosis

GSE89636: Amino Acid Transporter Slc38a5 Mediates Glucagon Receptor Inhibition-Induced Pancreatic -Cell Hyperplasia in Mice

GSE77178: Transcriptional profiles of skeletal muscle stem cells from mice of different ages, exercise status, and Ccnd1 genotypes

GSE78938: Gene expression profile of chemical-induced neural stem cells from defined fibroblasts

GSE80168: Single cell sequencing of Dgcr8 knockout embryonic stem cells plus/minus miR-294 or let-7

GSE73861: Development and Plasticity of Alveolar Type 1 Cells

GSE88982: RNA-seq of mouse myeloid progenitors reveals two independent pathways for monocyte production via GMPs and MDPs

GSE84375: Salmonella Typhimurium evades macrophage defense by derailing metabolic pathways

GSE81417: microRNAs with an AAGUGC seed motif constitute an integral part of a signaling network driving NSCLC cell proliferation

GSE77645: 4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

GSE72831: Dynamic changes in E protein activity orchestrate germinal center and plasma cell development [RNA-Seq]

GSE78688 (mouse): Activity-dependent transcriptional changes in human neurons

GSE77635: Genetic and Epigenetic Landscapes of Laterally Spreading Tumors of the Colorectum

GSE133248: Next Generation Sequencing of Wild Type and Gata2+/- HSCs

GSE89627: Testing the Ret and Sema3d genetic interaction in mouse enteric nervous system development

GSE81687: Targeting Taxane-Platin Resistant Lung Cancers with JumonjiC Lysine Demethylase Inhibitors (RNA-Seq)

GSE131448: Expression profiling in STAG2 mutant K562 cells

GSE93801: Sub-population RNAseq characterization of cell types produced over time in an in vitro model of human inhibitory interneuron differentiation.

GSE142986: Investigate the role of MLKL in regulating TNF-induced endothelial cell inflammatory response

GSE78696: Key regulators in two different colorectal cancer cell lines 1638N-T1 vs. CMT-93

GSE133933: Effect of fibulin-3 knockdown on malignant mesothelioma cells

GSE81084: FOXO1 is an oncogenic mediator in AML1-ETO leukemia

GSE81396: Total RNAseq of human putamen and caudate nucleus tissues in healthy control and Bipolar Disorder individuals

GSE114473: Competition for energy between immunity and homeothermy triggers trade-offs and regulates host defense strategies

GSE133112: BCL6 mediates Chemoresistance in Acute Myeloid Leukemia

GSE114065: Transcriptomes from nave CD4+ T-cells from infants and children with and without food allergy [RNA-seq]

GSE131455: Dynlrb1 is Essential for Dynein Mediated Transport and Neuronal Survival

GSE95491: EZH2 enables germinal center formation through epigenetic silencing of CDKN1A and an Rb-E2F1 positive feedback loop

GSE155845: RNA-sequencing of Control and Bisphenol A (BPA) exposed mice livers.

GSE132548: HCV infection of adult hepatocytes results in temporally structured transcriptional responses which partially overlap with the IRF1 regulon

GSE98675: The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks

GSE125846: Chromatin remodeling mediated by ARID1A is indispensable for normal hematopoiesis in mice (RNA-Seq)

GSE87799: Novel transplantation modalities for generating transcriptionally dependable new microglia from hematopoietic stem and progenitor cells

GSE81673: Characterisation of EZH2-deficient human embryonic stem cells [single cell RNA-seq]

GSE86600: Expression profiling of infant and young adult lung endothelial cells by RNA-sequencing.

GSE78527: RNA sequencing of siSNRNP40 in breast cancer cells

GSE81716: Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number

GSE97196: RNAseq profiling of AMCase-expressing lung epithelial cells

GSE98430: Low-input RNA-seq experiment to identify genes with a similar expression pattern to that of Lin28b

GSE98976: Identification of PAX7-induced transcriptional changes and PAX7 genomic binding during skeletal myogenic differentiation of H9 embryonic stem cells

GSE102407: Role of BET proteins in YAP/TAZ-dependent transcription [RNA-seq 1]

GSE91016: Global transcriptional profiling changes upon knockdown of LKB1 in human glioblastoma cell lines

GSE129082: Analysis of ARID3A and ARID3B regulated genes by RNA-seq

GSE93804: Next Generation Sequencing of CNS-infiltrating Tox-sufficient and -deficient OT-1 cells in ODC-OVA mice 7 days after LCMV-OVA infection

GSE112341: Novel risk variants affecting enhancers of TH1 and TREG cells in type 1 diabetes [RNA-seq]

GSE149779: Distinct functions of tissue-resident and circulating memory Th2 cells in allergic airway disease

GSE79410: Transforming growth factor- and Notch ligands act as opposing environmental cues in the plasticity of type 3 innate lymphoid cells

GSE79572: Candidate genes and pathways downstream of PAX8 involved in ovarian high-grade serous carcinoma

GSE79487: RNA sequencing of E11.5 Control and Prmt5cKO forelimbs

GSE85657: Thrombospondin1 replacement prevents cerebral cavernos malformations

GSE79920: Single-nucleus RNA-seq on undifferentiated human KD3 myoblasts and differentiated myotubes and mononucleated cells.

GSE79558: Bach2 keeps homeostasis in lung by regulating inflammatory response and maintaining function of alveolar macrophage.

GSE86609: The Arcuate Estrogenome: Estrogen Response Element-dependent and -independent Signaling of ER

GSE144347: CRNKL1 is a highly selective regulator of intron-retaining HIV-1 and cellular mRNAs

GSE78149: Stella prevents excessive de novo DNA methylation during mouse oogenesis

GSE101806: Expression of Piwi protein MIWI2 defines a distinct population of multiciliated cells

GSE140554: RNAseq for the identification of genes induced upon TGR5 stimulation in intestinal stem cells

GSE130307: Enhancement of Human B Cell Differentiation and Function in Lymph Nodes by the TLR9 Agonist MGN1703

GSE137057: Gene expression profile of thymus transplantation based spontaneous murine T cell acute lymphoblastic leukemia (T-ALL) model

GSE128911: RNA-seq of breast cancer cell lines post ligand treatment II

GSE103830: Gene expression profile (RNAseq) of wild-type and Zeb1 (+/-) peritoneal mouse macrophages