Explore curated data sets and assays

Pluto has a large database of published data, available to explore, conduct your own analysis, and view QC reports.

Sequencing-based assays (Page 43)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 43)

GSE80207: Transcriptome analysis in a radiosensitive and a radioresistant cell line after ionizing radiation

GSE84476: Transcriptomic Differences Associated with TSC2 Gene Expression Loss in Lymphangioleiomyomatosis [human cells]

GSE81441: Mutant p53 R270H induces invasion and metastasis of mouse intestinal tumor organoids through gain-of-function mechanism

GSE79903: The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2

GSE75417: mRNA-seq analysis of B3 pre-B cell line from STATegra Project

GSE78984: MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

GSE116234: Bloodstream infection in leukemia

GSE74055: Histone H3 lysine 4 monomethylation modulates longrange chromatin interactions at enhancers

GSE86602: Comparison of gene expression profiles between SCD1 knockdown and vector control of Huh7 cells and PLC/PRF/5 cells by RNA-sequencing

GSE94098: FTO regulates adult neurogenesis through modulating the dynamics of N6-methyladenosine

GSE110481: DNMT1 in Six2 progenitor cells is essential for transposable element silencing and kidney development

GSE79702: USP15 regulates type I interferon response in vivo and is required for pathogenesis of microbial and autoimmune neuroinflammation

GSE137628: RNA-seq of mouse testis samples from different treatment groups

GSE84405: ARID1A-mutated ovarian cancers depend on HDAC6 activity

GSE129480: Targeting the CBM signalosome induces Treg to prime the tumor environment for effective immune checkpoint therapy

GSE80597: Fetal and adult progenitors give rise to unique populations of CD8+ T cells

GSE80732 (human): Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq

GSE79252: Microglia self-renewal comprises context-dependent random or clonal expansion.

GSE81803: RNA-sequencing in WT and Fmr1-/- (KO) neurons treated with Jq1 and THZ

GSE90983: Transcriptome Data of Peritoneal Macrophages Isolated from ApoE-/-/Ch25h-/- Mice

GSE79426: Direct GR binding sites potentiate clusters of TF binding across the human genome [3]

GSE147227: Effect of Particulate Matter (PM10) on innate immunity upon H5N1 infection

GSE84812: Profiling of AKVPL vs AKVPSL derived tumor cells (Mouse)

GSE81420: Gene expression analysis of murine FLT3ITD induced acute leukemias

GSE91087: Comparing gene expression in iPSC derived RPE from control and AMD donors

GSE79174: RNAseq of pre-T cells from control and Zfp36l1, Zfp36l2 double conditional knockout mice.

GSE80673: Comprehensive transcriptomes of mouse pancreatic islet delta, beta, and alpha cells

GSE144725: RNA sequencing in ALS patient fibroblasts with a mutation in CHCHD10

GSE80953 (human): Temporal comparison of transcriptomic alterations in human, mouse and rat primary B lymphocytes exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)

GSE81439: Identification of an NKX3.1-G9a-UTY regulatory network that controls prostate differentiation (Human_RWPE1_RNA-Seq)

GSE85161: DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [RNA-Seq]

GSE74176: Activating Mutation in STAT5 Is Sufficient To Drive PTCL peripheral T-Cell Lymphoma (PTCL)

GSE79577: High throughput characterization of the m6A demethylase FTO by CLIP and RNAseq

GSE81095: RNA Sequencing Data in differentiating mouse embryonic stem cells [day2 and 2.5 in differentiation]

GSE109353: Astrocyte-derived Interleukin-33 promotes microglial synapse engulfment and neural circuit development II

GSE74178: RNA binding protein SYNCRIP regulates the leukemia stem cell program [RNA-Seq]

GSE80812: Klf5 regulates muscle differentiation via directly targeted muscle-specific genes in cooperation with MyoD

GSE81466: SOX7 supresses the expression of RUNX1 target genes during EHT

GSE154121: Investigating the Mechanism of Adherent-Invasive E. coli Induced Mitochondrial Fission in the Intestinal Epithelium (Exp. 1)

GSE79993: Transcriptome changes in cultured mouse cortical neurons infected with lentivirus expressing shMeCP2

GSE80682: Lineage-specific genes are prominent DNA damage hotspots during leukemic transformation of B-cell precursors

GSE80237: RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected EVT cells

GSE80810: Paternal X inactivation is fully Xist-dependent with strain-specific kinetics revealed by single cell embryo profiling

GSE144980: Single cell RNA-seq of mouse dorsal raphe Pet1 neurons

GSE79452: Janus kinase 1 is essential for inflammatory cytokine signaling and mammary gland remodeling

GSE79580: Role of H3.3 residues in chromatin assembly and cell fate at the maternal-to-embryo transition

GSE106338: Gene expression profiling study by RNA-seq in PDX model based diffuse type gastric cancers.

GSE76205: Integration of RNA-seq transcriptomics with metabolomics in mouse model of cigarette smoke exposure

GSE80264: Transcriptome analysis of H9 hESC derived cerebral organoids

GSE80336: Transcriptome profiling of the human dorsal striatum in bipolar disorder

GSE80268: Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [RNA-seq]

GSE80960: Dynamic DNA methylation landscape defines brown and white cell specificity during adipogenesis (RNA-Seq)

GSE96818: Analysis of WT and IRF1-deficient Th9 cell transcriptomes in the presence of IFN-gamma

GSE78708: Not All H3K4 methylations are Created Equal: Mll2/COMPASS Dependency in Primordial Germ Cell Specification

GSE81817: Glutamine Deficiency Occurs in Regions of Solid Tumours and Promotes Dedifferentiation through Inhibition of Histone Demethylation

GSE106158: Comparative gene expression profiling of mouse pXEN, XEN, ES, and rat XENP cells

GSE107617: Gene expression in islets from control (WT) or transgenic (MYC) animals

GSE149838: In vivo CRISPR screening identifies Fli1 as transcriptional safeguard that restrains effector CD8 T cell differentiation [RNA-seq]

GSE80346: Transcriptional regulatory dynamics set the stage for a coordinated metabolic and neural response to social threat in mice [RNA-Seq data set]

GSE82099: RNA-Seq of mouse E12.5 brain regions

GSE111168: Next Generation Sequencing Facilitates Quantitative Analysis of Retinoblastoma Transcriptomes

GSE80128: Evidence for two protein coding transcripts at the Igf2as locus

GSE79403: IL-31 regulation of transcripts in skin

GSE80963: Gene expression changes upon NUSAP1 over- or under-expression in PC-3 or DU145 cells.

GSE80284: Differential expression of Hdc-/- VS WT hematopoietic stem and progenitor cells (HSPC) from bone marrow.

GSE146833: Transcriptional profiling of mouse pancreatic tumor cells II

GSE134567: Gene expression profiling via RNA sequencing of patient brain tumors cultured in 3D bioengineered cultures

GSE99246: Interleukins 12 and 15 induce cytotoxicity and early natural killer cell differentiation in type 3 innate lymphoid cells

GSE84450: ER stress increases alternative splicing of SRFS3s poison exon.

GSE85723: The ubiquitin ligase HUWE1 regulates hematopoietic stem cell maintenance and lymphoid commitment [high-throughput sequencing]

GSE83381: Immune-restricted epigenetic reader SP140 maintains macrophage identity and activation states critical to intestinal homeostasis [RNA-seq]

GSE78183: Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers Elovl2 as a novel regulator of glucose-induced insulin secretion

GSE80160: Role of transcriptional coregulator GRIP1 in control of macrophage polarization and metabolic homeostasis

GSE139270: AIB1D4 role in early breast cancer progression

GSE76514 (mouse): Laser-capture microscopy coupled with Smart-seq2 (LCM-seq) for robust and efficient transcriptomic profiling of mouse and human tissues

GSE75842: Screening microRNA-196 targets in 11q23-translocation acute myeloid leukemia reveal mechanisms maintaining leukemia stemness with therapeutic potential [RNA-seq]

GSE124922 (mouse): TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells

GSE77846: Dnmt3a haploinsufficiency transforms Flt3-ITD myeloproliferative disease into a rapid, spontaneous, and fully-penetrant acute myeloid leukemia (Bulk RNA-Seq)