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Sequencing-based assays (Page 40)

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Explore curated data sets and assays

Sequencing-based assays (Page 40)

GSE77250: Total RNA sequencing of APC mutant and wt colonic organoids

GSE53983 (mouse): Global Transcriptome Analyses of Mammalian Terminal Erythroid Differentiation

GSE79249: Identification of long noncoding RNAs regulated by p53

GSE84329: RNA sequencing of Cyfip2N/- and Cyfip2N/N mice

GSE79018: Functional characterization of DNA methylation in the oligodendrocyte lineage [RNASeq_Dnmt1cKO_OPC]

GSE78996: Characterisation of Transcriptional Changes in the Spinal Cord of the Progressive Experimental Autoimmune Encephalomyelitis ABH Mouse Model by RNA Sequencing

GSE83549: RNA-seq characterization of downstream effects of upregulating SMN2 via down-regulating PRC2 or blocking the PRC2:SMN-AS1 interaction with a mixmer oligonucleotide

GSE77288: Batch effects and the effective design of single-cell gene expression studies

GSE109439: Transcriptomes of human monocytes and monocyte-derived macrophages with or without glucocorticoid treatment

GSE134704: Cortical transcriptome reveals widespread inflammation in brain of Gaa-/- mice

GSE71387: EZH2 inhibition as a targeted therapy for H3K27M mutant pediatric gliomas [RNA-Seq]

GSE75868: Naive Pluripotent Stem Cells Display Transcriptional and Epigenetic Signatures of the Human Pre-Implantation Embryo

GSE75513: Rage null mice exposed to cigarette smoke demonstrate attenuated inflammatory, oxidative and ER stress responses in alveolar macrophages

GSE90094: The Ets-family transcription factors PU.1 and SpiB are redundantly required by mature B cells to sense and respond to environmental cues

GSE77879: Genetic Tagging During Human Mesoderm Differentiation Reveals Tripotent Lateral Plate Mesodermal Progenitors

GSE73216: Dose-dependent role of the cohesin complex in normal and malignant hematopoiesis [RNA-Seq]

GSE79028: Transcriptomic analysis of wild type and Del(Hotair)-/- mouse tissues

GSE76010: The Histone Variant MacroH2A1.2 is Necessary for the Activation of Muscle Enhancers and Recruitment of the Transcription Factor Pbx1

GSE81259: Transcriptional profiling reveals monocyte signature associated with JIA patient poor response to methotrexate

GSE126537: Rorc disruption in human FG pancreatic cancer cells

GSE95734: A somatic mutation in erythro-myeloid progenitors causes (late-onset) neurodegenerative disease

GSE76132: Leukemia-associated activating mutation of Flt3 expands dendritic cells and alters T cell responses

GSE97478: Single cell RNA sequencing of interneurons of the mouse dorsolateral striatum I

GSE97249: Cell intrinsic changes in transcription of nave CD4 T cells upon S1pr1 deletion

GSE94597: Down-regulation of E protein activity augments an ILC2 differentiation program in the thymus

GSE97527: PAF1 regulation of promoter-proximal pause release via enhancer activation

GSE76909: Widely Interspaced Zinc Finger Motifs, Wiz, binds promoters containing CTCF-binding sites and is required for normal neural function in the mouse

GSE71876 (mouse): Survival of pancreatic cancer cells lacking KRAS function

GSE135050: RNA sequencing analysis of hepatic transcriptome profiles in experimental nonalcoholic steatohepatitis

GSE74155: Single-cell analysis of allelic gene expression in pluripotency, differentiation and X-chromosome inactivation

GSE81550: RNA-Seq expression profiling of hepatocellular carcinoma and adjacent non-tumor liver tissues

GSE142871: PIM kinase inhibition in HCC xenograft

GSE76929: RNA sequencing of C57BL/6J mice, heterozygous for knockout of Hnrnph1 gene, as well as C57BL/6J mice controls

GSE76130: Alternative routes to induced pluripotent stem cells revealed by reprogramming of neural lineage

GSE77929: Longitudinal transcriptome profiling of post-treatment Lyme disease syndrome

GSE76922: Comprehensive molecular phenotypic effects of the large deletion on chromosome 22q11.2

GSE87404: Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals [RNA-seq]

GSE142987: RNA-seq analysis of liver cancer patients' plasma

GSE89992: Non-Cell-Autonomous Tumor Suppressor Activity of the Homeobox Gene Cdx2 in the Gut

GSE76932: Next generation sequencing comparing effects of vehicle, PTH, and YKL-05-093 in Ocy454 cells

GSE75951: Transcriptome of mouse preimplantation development [Xist KO]

GSE78146: Methylation and gene expression profiling in Dnmt3a-deficient chronic lymphocytic leukemia and peripheral T-cell lymphoma in mice.

GSE97367 (mouse): BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage

GSE141072: Sex differences in LCWE-induced model of Kawasaki Disease vascultitis and response to Anakinra treatment

GSE139529: Comparison of whole blood transcriptional changes induced by menignoccocal capsular group B vaccines in mice

GSE76359: Deciphering the importance of the palindromic architecture of the immunoglobulin heavy chain 3 regulatory region.

GSE97945: ChAHP (Adnp, Chd4, HP1) mediates sequence-specific recruitment of HP1 independent of H3K9 methylation

GSE99164: Next Generation Sequencing Quantitative Analysis of Tshz1GFP/+ and Tshz1GFP/RA purified amygdalar ITCs

GSE135330: Microglial microRNAs mediate sex-specific responses to tau pathology

GSE73221: Progressive chromatin condensation and H3K9 methylation regulate the differentiation of embryonic and hematopoietic stem cells

GSE122644: Apical progenitors remain multipotent throughout cortical neurogenesis

GSE72105: A specific E3 ligase/deubiquitinase pair modulates TBP protein levels during muscle differentiation

GSE95435: Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease [1]

GSE78209: Pervasive TTP binding but selective target mRNA destabilization in the macrophage transcriptome [RNA-Seq_2]

GSE90816: Hox Abdominal-B Genes in the Developing Kidney

GSE147976: RNA-seq analysis in NRG1 and enzalutamide treated 22Pc-EP cell line

GSE78199: BASP1 modifies the Tamoxifen response

GSE134031: TREM2regulatesmicroglial lipid metabolismduring aging in mice [RNA-Seq]

GSE76983: Single-cell RNA-seq of sorted and micro-dissected mouse bone marrow cells

GSE112415: A network of noncoding regulatory RNAs acts in the mammalian brain I

GSE90824: Blimp1 induces transient metastatic heterogeneity in pancreatic cancer [RNA-seq]

GSE81266: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis

GSE79613: iPSCs Reveal Protective Modifiers of the BMPR2 mutation in Pulmonary Arterial Hypertension

GSE72095: Temporal transcriptomics suggest that twin-peaking genes reset the clock

GSE76978: A faithful in vivo model of human MLL-AF4 proB acute lymphoblastic leukemia

GSE79087: REV-ERB influences stability and nuclear localization of the glucocorticoid receptor

GSE104423: Heart failure patients' peripheral blood mononuclear cell gene expression profiles before mechanical circulatory support

GSE77523: Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells [RNA-seq]

GSE103799: PMP22 antisense oligonucleotides reverse clinical, pathological, and molecular features of Charcot-Marie-Tooth disease type 1A

GSE85118: INO80 is required for oncogenic transcription and tumor growth in non-small cell lung cancer [RNA-seq]

GSE77541: Genome-wide expression profile in Fh1-competent vs Fh1-deficient mouse kidney cells

GSE77646: Gene expression profiling of AR deletion in prostate luminal cells

GSE76389: FOXE3 Contributes to Peters Anomaly through Transcriptional Regulation of an Autophagy Associated Protein termed DNAJB1

GSE76371: mRNA expression profile of Lymphocytes

GSE76425: CDK4/6 inhibition sensitizes myeloma to lenalidomide by reducing the MEIS2 to CRBN ratio that accelerates IKZF1 and IKZF3 degradation

GSE77682: RNA-seq of human fibroblasts after irradiation

GSE135527: Tumors with TSC mutations are sensitive to CDK7 inhibition through NRF2 and glutathione depletion

GSE77597: RNA-Sequencing of HUVEC treated with Tie2 activating antibody