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Sequencing-based assays (Page 121)

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Explore curated data sets and assays

Sequencing-based assays (Page 121)

GSE154428: Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimers disease

GSE156271: Core transcription regulatory circuitry orchestrates stratified epithelial homeostasis (RNA-seq)

GSE157056: Mechanical control of MSC adipogenesis does not require Lamin A/C

GSE65485: Next Generation Sequencing Identification of HBV-MLL4 integration and its molecular basis in Chinese hepatocellular carcinoma

GSE153662: Next Generation Sequencing of Wild Type and Zeb1-/- CLP

GSE154468: RNA-Seq of MADM induced UPDs of Chr. 7, 11, 12 (QuantSeq)

GSE153751: RNA-sequencing of FACS-sorted Prominin1+ radial glial cells of E12.5 SmadNes mutant embryos (Smad1wt/fl;Smad5wt/fl;Nestin:Cre+/0) and control littermates (Smad1wt/fl;Smad5wt/fl;Nestin:Cre0/0)

GSE157069: Transcriptome analysis of the circadian clock gene BMAL1 deletion with opposite carcinogenic effects

GSE157110: High throughput RNA-sequencing identifies Differentially Expressed Genes (DGS) of control and shATXN7L3 HCCLM3 cells

GSE156450: RNA sequencing of livers from Per2-/- and WT mice following MC38 cancer cells injection reveals transcriptional differences as early as 7 days post injection

GSE154355: Nfil3, a target of the NACA transcriptional coregulator, affects osteoblast and osteocyte gene expression differentially.

GSE154398: Zfp281 functions as a barrier in embryonic stem cells to extraembryonic endoderm stem cells differentiation [RNA-seq]

GSE156119: RNA-seq of WT ileum with DEX, Zn and untreated controls

GSE154368: Increased transcriptome variation and localised DNA methylation changes in oocytes from aged mice revealed by parallel single-cell analysis [scRNA-seq]

GSE157185: Comparative transcriptional profiling of motor neuron disorder-associated genes in various human cell culture models

GSE156071: Transcriptome reprogramming of CD11b+ bone marrow cells by pancreatic cancer extracellular vesicles

GSE156135: M. tuberculosis reprograms HSCs to limit myelopoiesis and impair trained immunity via a type I IFN/iron axis [AERO_SERIES_2]

GSE151698: Microglial responses to CSF1 overexpression do not promote expansion of other glial lineages

GSE131568: Differential expression of circular RNA in oral leukoplakia: novel potential biomarkers exploration for diagnosis and prognosis of precancer

GSE151691: Essential role for CD30-Transglutaminase 2 axis in memory Th1 and Th17 cell generation.

GSE151829: Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses

GSE151822: RUNX2 is a dependency factor in immature and KMT2A-rearranged T-cell acute lymphoblastic leukemia [KMT2A-MLLT1_ Runx2 ko RNA-seq]

GSE154495: A CTCF binding element regulates RA-induced early ESCs differentiation through orchestrating long-range chromatin interactions between its adjacent enhancers and HoxA

GSE151830: Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses

GSE153898: Alteration in the transcriptome of lung resident fibroblast isolated from fibrotic lungs of TGFalpha mice upon genetic knockdown of Aurora Kinase B

GSE157234: Microglia RNA profiling in steady state and post-LPS chellenge in the absence of IL-10R, or both IL-10R and TNF, in microglia.

GSE153909: Next Generation Sequencing Facilitates Quantitative Analysis of the effects of PD-1 deficiency on sorted mouse pulmonary ILC2 Transcriptomes

GSE156126: Temporal analysis of Brd4 displacement in the role of B cell survival, proliferation and differentiation

GSE154573: Lack of desmin in mice causes structural and functional disorders of neuromuscular junctions

GSE154417: The precursor of PI(3,4,5)P3 alleviates aging by activating daf-18(Pten) and independent of daf-16

GSE156134: M. tuberculosis reprograms HSCs to limit myelopoiesis and impair trained immunity via a type I IFN/iron axis [Bulk_SERIES_1]

GSE156338: Circulation of gut pre-activated nave CD8+ T cells enhances anti-tumor immunity in B cell defective mice

GSE29282: A biochemical basis for toggling enhancers from the active to poised state in B cells

GSE156918: FLCN Gene Ablation Reduces Fibrosis and Inflammation in a Diet-Induced NASH Model

GSE156136: M. tuberculosis reprograms HSCs to limit myelopoiesis and impair trained immunity via a type I IFN/iron axis [EG_SERIES_3]

GSE154516: Transforming growth factor beta signaling and decidual development in mice

GSE154622: Different mutant RUNX1 oncoprotein classes program alternate hematopoietic differentiation trajectories [RNA-Seq]

GSE156202: Modifying macrophages at the periphery has the capacity to change microglial reactivity and increase ALS survival

GSE155088: Enhancer priming by H3K4 methylation safeguards germline competence [scRNA-seq]

GSE157562: FoxO maintains a genuine quiescent muscle stem-cell state until geriatric age (RNA-seq)

GSE156506: Disturbed mitochondrial dynamics in CD8+ TIL reinforce epigenetic programming linked with T cell exhaustion [RNA-Seq]

GSE155120: IFN-I and CD8 T cells increase intestinal barrier permeability after chronic viral infection

GSE154615: Next Generation Sequencing of LSK EpCAM+ and EpCAM- of Zeb1-/-

GSE156667: Effect of SWELL1 (LRRC8a) gene deletion on gene expression in differentiated myotubes

GSE157434: Quantitative RNAseq Analysis of Treatment Outcomes with Talazoparib, Romidepsin or Combination in MBL2 cell line

GSE154654: Autophagy Promotes Growth of High Tumor Mutational Burden Tumors by Inhibiting a T Cell Immune Response

GSE155182: Single cell RNA seq of hepatic and renal p16 positive cells

GSE154680: Foxp3 imparts regulatory T cell epigenetic identity through a transcription factor relay

GSE157507: Lymphatic endothelial cells contribute to blood vessel formation in tumours

GSE154659: Transcriptional reprogramming of distinct peripheral sensory neuron subtypes after axonal injury

GSE154543: An epigenetic program established by gene environment interactions initiates pancreatic carcinogenesis [Set3]

GSE156230: Gene therapy with secreted acid alpha-glucosidase rescues Pompe disease in a novel mouse model with early-onset spinal cord and respiratory defects

GSE155217: CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation [RNA-seq]

GSE156235: Next-generation sequencing facilitates quantitative analysis of control and Lhx6-/- molar transcriptomes

GSE156505: DIS3 ribonuclease is required for the maintenance of spermatogenic lineage in mice

GSE156605: Changes of gene expression patterns of mouse lung epithelial cells in response to IL-15 whether or not they have MCMV-memory CD8 T cells [mouse in vivo]

GSE157215: Brain RNA-seq in the LXS RI strains: Saline and ethanol treatment

GSE157667: Effect of maternal iron deficiency on placental transcriptome in mouse

GSE156242: RNA-seq of GR WT and GR DIM ileum/IEC with DEX, Zn and untreated controls

GSE156234: Single-Cell RNA Sequencing Uncovers Heterogenous Transcriptional Signatures in Macrophages during Efferocytosis

GSE155291: Amelioration of autism-like social deficits by targeting histone methyltransferases EHMT1/2 in Shank3-deficient mice

GSE156543: Suppression of DDX39B sensitizes ovarian cancer cells to DNA-damaging chemotherapeutic agents via destabilizing BRCA1 mRNA

GSE156749: Upregulation of 5-terminal oligopyrimidine mRNA translation upon loss of the tumor suppressor ARF

GSE156542: Loss of TDP-43 in astrocytes leads to motor deficits by triggering A1-like reactive phenotype and tri-glial dysfunctions

GSE156267: The microRNA, miR-133b, functions to slow Duchenne muscular dystrophy pathogenesis

GSE156533: Transcriptomic profiling in 3-month-old P23H Retinitis Pigmentosa mouse retinas

GSE156936: RNA-Seq analysis of E4FAD mouse brain cortex to evaluate the impact of omega-6 fatty acid docosapentaenoic acid on neuroinflammation

GSE156307: Gene Expression in the developing hindstomach and forestomach of wild type and GATA4 conditional knock out and knock in embryonic mice

GSE157156: Liver Epithelial Focal Adhesion Kinase Modulates Fibrogenesis and Hedgehog Signaling

GSE157244: Type I interferon responses to ischemic injury begin in the bone marrow of mice and humans and depend on Tet2, Nrf2, and Irf3

GSE157270: Crtc1 deficiency aggravates fat accumulation in the white adipose tissue

GSE157233: Comparative gene expression profiling in livers of A1cf-transgenic, A1cf-knockout, and wild-type mice

GSE157375: The inner nuclear membrane protein LEMD2 and the chromatin organizer SATB2 regulate overlapping gene-sets in primary cortical neurons

GSE157602: RNA-seq analysis of PD-1 treatment outcomes in IL-34 expressing or not expressing CT26 cell line

GSE157460: Interleukin-6 (IL-6) deficiency enhances intramembranous osteogenesis following stress fracture in mice

GSE157635: TREM2 Alzheimers variant R47H causes similar transcriptional dysregulation to knockout, yet only subtle functional phenotypes in human iPSC-derived macrophages

GSE37686: Identification of miRNA signatures during the differentiation of hESCs into retinal pigment epithelial cells

GSE38234: Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of binding sites in a cell type-specific manner