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Sequencing-based assays (Page 122)

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Explore curated data sets and assays

Sequencing-based assays (Page 122)

GSE49339: m6A-dependent regulation of messenger RNA stability

GSE69529: Elucidating the etiology and molecular pathogenicity of infectious diarrhea by high throughput RNA sequencing

GSE61141: Phenotypic responses of differentiated asthmatic human airway epithelial cultures to rhinovirus

GSE56152: Paired RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons

GSE46044: A compendium of hematopoietic regulators, chromatin modifiers and basal transcription factors occupy CBF-MYH11/RUNX1 target genes

GSE43770: Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy

GSE44183 (human): Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing

GSE45982 (human): EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation

GSE65099: Loss of endometrial plasticity in recurrent pregnancy loss (RNA-Seq)

GSE44379: Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 4)

GSE44267: Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells

GSE49712: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

GSE54416: Global gene expression differences between blood- and lymphatic-specific endothelial colony forming cells

GSE73268: Next Generation Sequencing Facilitates Quantitative Analysis of HCC cells transfected with NCsiRNA or ODC1siRNA

GSE46579: A blood based 12-miRNA signature of Alzheimer patients

GSE47488: Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [RNA-Seq]

GSE47718: Smoking Dysregulates the Human Airway Basal Cell Transcriptome at COPD-linked Risk Locus 19q13.2

GSE47626: Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes

GSE94570: Identification of MELK-regulated genes in prostate cancer cells using next-generation sequencing

GSE53665: High ERG expression in human HSPCs promotes progenitor but not stem cell proliferation and molecular signatures that are enriched in high ERG leukemia.

GSE51025: Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming

GSE51684: Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for amyotrophic lateral sclerosis and frontotemporal dementia (Multiplex Analysis of PolyA-linked Sequences)

GSE43520 (human): The evolution of lncRNA repertoires and expression patterns in tetrapods

GSE49159: mRNA differential expression analysis in a human ex vivo model of chronic wounds

GSE48678: Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin

GSE47976: Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3 UTRs

GSE60996: Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq)

GSE50792: Tissue-specific RNA-seq in human evoked inflammation identifies novel blood and adipose lincRNA signatures of cardio-metabolic diseases

GSE51518: RNA-seq from primary skin fibroblasts, derived of matched pairs of middle and late donor age

GSE85088: CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions [RNA-seq]

GSE51124: Gene expression, single nucleotide variant and fusion transcript discovery in archival material from breast tumors

GSE52036: RNA-seq analysis reveals endogenous aryl hydrocarbon receptor regulation is highly associated with eicosanoid synthesis and tumor necrosis factor activity in MCF-7 cancer cells

GSE125701: Comparative transcriptome profiling myometrial and vascular smooth muscle cells

GSE50386: Epigenomic plasticity enables human pancreatic alpha to beta cell reprogramming

GSE52166: Molecular Hallmarks of Naturally Acquired Immunity to Malaria

GSE60585: Integrator complex regulates NELF-mediated RNA Polymerase II pause/release and processivity at coding genes [RNA-seq]

GSE55030: Activation of the P-TEFb Complex by Lethal Prostate Cancer-Associated Enhancer RNAs [RNA-Seq]

GSE52148: High resolution ChIP sequencing reveals novel bindings targets and prognostic role for SOX11 in Mantle cell lymphoma (RNA-Seq)

GSE54322: RNA-seq analysis in Cornea epithelial cells (CECs), skin epithelial cells (SECs), LSCs after knocking down PAX6 (3-D shPAX6 LSCs) and SESCs transduced with PAX6(3-D PAX6+ SESCs) upon 3-D differentiation

GSE52202: iPSC derived motor neuron cultures from C9ORF72 carriers

GSE58708: Transcriptomic profiling of sequential tumours from breast cancer patients provides a global view of metastatic expression changes following endocrine therapy

GSE62212: Identifying genes regulated by Kruppel-like factor-9 by RNA-seq in human glioblastoma stem cells.

GSE53327: Genome-wide discovery of human splicing branchpoints [RNAse]

GSE53094: Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [RNA-Seq]

GSE54505: TWIST1-induced microRNA-424 drives an intermediate epithelial-to-mesenchymal transition that opposes metastasis

GSE112734: A genome-wide screen identifies E2F6 as critical factor for TMZ chemoresistance in EGFRvIII expressing GBM (CRISPR library RNA-seq)

GSE51878: Identification and Initial Functional Characterization of SENCR, a Long Non-Coding RNA Enriched in Human Vascular Cells

GSE53239: RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms, and GTPase binding in bipolar disorder

GSE54478: Identification of a dynamic core transcriptional network in t(8;21) AML regulating differentiation block and self-renewal [RNA-Seq]

GSE103567: UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition

GSE48850: Novel kinase fusion oncogenes in post-Chernobyl radiation-induced pediatric thyroid cancers

GSE56512: InFusion: advancing discovery of fusion genes and chimeric transcripts from RNA-seq data

GSE24565: Small RNA-seq from ENCODE/Cold Spring Harbor Lab

GSE54878: Global gene expression profiling from LeuCAG3'tsRNA depleted- HeLa and HCT-116 cell lines through 50 base pair paired-end RNA-seq

GSE53983 (human): Global Transcriptome Analyses of Mammalian Terminal Erythroid Differentiation

GSE56010: Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions

GSE55534: Rate of elongation by RNA polymerase II is influenced by specific gene features and histone modifications

GSE89975: Proliferation pause as an early blockade of human cellular reprogramming toward pluripotency [RNA-seq analysis]

GSE54846: RNA-seq from control and macroH2A1-depleted IMR90 primary human lung fibroblasts

GSE56930: Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells

GSE50676: Landscape and variation of RNA secondary structure across the human transcriptome

GSE68102: Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing [RNA-seq]

GSE72141: GATA3-mediated chromatin reprogramming in breast cancer cells

GSE62241: Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (RNA-Seq)

GSE50582: Transcriptomics analysis of gene expression in normal and METTL3 or WTAP deficient Human 293T cells

GSE52431: Human iPSC-based Modeling of Late-Onset Disease using Progerin-induced Aging

GSE57027: Controlling for gene expression changes in transcription factor protein networks.

GSE55458: Gene expression analysis of airway epithelial cells exposed to flagellin via RNA-seq

GSE63782 (human): Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition

GSE69415: Fra-1 is a key driver of colon cancer metastasis and a Fra-1 classifier predicts disease-free survival

GSE55727 (human): Integrative Genomic Analysis Reveals Widespread Enhancer Regulation by p53 in Response to DNA Damage

GSE103706: A map of gene expression in neutrophil-like cell lines

GSE78081: Immunological Imbalance in Fibrodysplasia Ossificans Progressiva Revealed by PBMC Transcriptome Analysis

GSE55939: Human germ cell formation in xenotransplants of induced pluripotent stem cells carrying X chromosome aneuploidies

GSE56689: Characterizing the contrasting roles of JMJD3 and UTX histone demethylases in T cell acute lymphoblastic leukemia [short_hairpins_RNA-seq]

GSE55946: Next generation sequencing identifies discrete classes of box C/D snoRNAs featuring different ends and RNA binding protein dependency

GSE56742: Abraxane, the Nanoparticle Formulation of Paclitaxel can Induce Drug Resistance by Up-regulation of P-gp

GSE58326: Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with Eralpha