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Sequencing-based assays (Page 50)

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Explore curated data sets and assays

Sequencing-based assays (Page 50)

GSE129398: Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with gastroparesis

GSE77129: Wiskott-Aldrich Syndrome-causative mutations disrupt alternative splicing and promote gene networks predisposed to hematologic malignancies

GSE121580: Gene expression profiling U87 cells knocking down Glud1 under low glucose treatment

GSE121035: RNA-seq of bone marrow tissue of wild type and Elf4 deficient mice after Plasmodium yoelii 17XNL infection

GSE107489: RNA-seq to compare wild type, db/+ and db/db islets

GSE112920: IL-27 in vaccine elicited cellular immunity

GSE117331: Differential gene expression in NPHS2-Cre +/+ mouse glomeruli versus wild-type control

GSE86813: Assessing the impact of loss of ATF7IP and SETDB1 on the transcriptome

GSE116404: Differential RNA-seq analysis of control vs. dnFGFR2b-expressing mouse otocysts reveals targets of FGFR2b signaling at the beginning of inner ear morphogenesis

GSE133684: Blood extracellular vesicle long RNA sequencing of human blood from pancreatic ductal adenocarcinoma (PDAC), chronic pancreatitis (CP) and healthy individuals

GSE110620: REVERSIR platform for the tailored control of GalNAc-siRNA conjugate pharmacology

GSE82260: ZMYND8 reads the dual histone mark H3K4me1-H3K14ac to antagonize the expression of metastasis-linked genes

GSE88735: Cooptation of tandem DNA repeats for the control of epithelial-to-mesenchymal transition [RNA-Seq]

GSE148721: RNA-seq analysis of WT, CD5 KO, CD6 KO, CD5/CD6 double KO (I) and LAT KO nave CD4+ T cells (II)

GSE154081: Comparison of gene expression profiles in hearts exposed to pressure overload (PO) with or without sildenafil treatment in PERK wild type (flx) or PERK cardiac-specific knockout 8cko) mice.

GSE129192: Characterization of Fetal Specific Transcriptional Programs in Thymic Epithelial Cells Identifies Myc as a Critical Determinant of Thymus Size [bulk RNA-Seq]

GSE129362: Transcriptome-wide effect profile of HuR inhibitor KH-3

GSE122886: Transcriptomic analyses of the testicular interstitial cells in murine neonates

GSE117228: Single cell RNA sequencing of primary-isolated erythroid progenitors [BFUE, CFUE, intermediates]

GSE118990: Comparative analysis of WT and ZEB1 KO cells in different stages during differentiation

GSE116894: RNA-sequencing of Control and TLE3-deficient Beige Adipocytes

GSE138520: Chemical reprogramming of fibroblasts to photoreceptor like cells [RNA-Seq]

GSE145383: The role of acid adaptation on transcriptome of breast cancer MCF7 cell line

GSE151937: mRNA sequencing of human osteoarthritis chondrocytes treated with or without autotaxin inhibitor

GSE139179: Differences in tissue populations following hematopoietic stem cell transplantation in Crohns disease patients

GSE89385: Development of a selective CDK9 degrader from a multi-targeted CDK inhibitor [RNA-seq]

GSE93124: Crizotinib v. DMSO in SW480 cells

GSE145180: RNA-seq of GAP43 overexpressed and control SW620 cancer cells

GSE120691: Differential analysis of gene expression profiles in peripheral blood cells of patients with cervical lesions

GSE142767: Chemogenomic profiling of breast cancer patient-derived xenografts reveals targetable vulnerabilities for difficult-to-treat tumors

GSE121460: Age-related loss of innate immune antimicrobial function of dermal fat is mediated by TGF

GSE120715: Quantitative analysis of bi-modal binding of BET proteins at promoters predicts I-BET sensitivity

GSE120216: Identifying transcripts that are transcriptinoally regulated by CBFB and RUNX1 using RNAseq

GSE119131: RNAseq of ribosomal fractionation to assess the effect of CBFB on translation regulation

GSE116949: Comparison of whole transcript and 3 RNA Sequencing methods

GSE119234: Analysis of gene expression differences in lymph node B cell populations of HIV-infected and uninfected controls

GSE97032: Alignment of the Transcriptome with Individual Variation in Animals Selectively Bred for High Drinking-In-the-Dark (HDID).

GSE130021: Single cell RNA-Seq of I2A rhabdoid cell line

GSE108519: mRNA sequencing to assess RfxCasR and matching shRNA specificity

GSE107650: Low carbohydrate diet study for non-alcoholic fatty liver disease patients

GSE119587: Effects of Polybrominated Diphenyl Ether (PBDE) Mixture on estrogen receptor positive (ER+) patient-derived tumor xenograft (PDX) model

GSE99085: Human serum and heparin-free platelet lysate as appropriate xeno-free alternatives for production of human MuStem cell batches

GSE100684: RNA-Seq of Kaposis sarcoma reveal alterations in glucose and lipid metabolism

GSE100356: Transcriptome of neonatal preBtzinger Complex neurons in Dbx1 reporter mice

GSE111600: Exploiting Mouse Models to Understand Female Hypersensitivity to Cocaine

GSE82106: BMP/Taz-Hippo signaling modulates VEGF-mediated angiogenesis

GSE104022: Molecular consequences of Dlx3 deletion by tamoxifen inducible K14 Cre in adult mouse epidermis (P42-P46) as determined by RNASeq analysis

GSE86430: Directional RNA-Seq on CD4+ T cells collected from children with asthma with/without obesity

GSE106681: GRHL2 is a key lineage determining factor which collaborates with FOXA1 to establish a targetable collateral pathway in the setting of endocrine therapy-resistant breast cancer (RNA-Seq data set 1)

GSE89771: Targeted intron retention and excision for rapid gene regulation in response to neuronal activity

GSE108255: Gain of function of the ATXN1-CIC complex drives cerebellar pathology in Spinocerebellar ataxia type 1 (part 2)

GSE103945: Differentiation of functional endothelial cells from human iPS cells

GSE88716: Cell-type-specific Brain Methylomes Profiled via Ultralow-input Microfluidics

GSE85627: Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq Mouse]

GSE129366: Transnuclear mice reveal a population of Peyers patch iNKT cells that regulate B cell class switching to IgG1

GSE138574: RNA sequencing analysis of HCT116 cells following 24 hours of metabolic recovery from methionine restriction +/- small molecule treatment.

GSE140031: RNASeq of Arg2 gRNA or scrambled gRNA CRISPR'd Tregs

GSE99399: A transcriptomic study of myogenic differentiation under the overexpression of PPAR by RNA-Seq

GSE127896: PI3K-Yap activity drives cortical gyrification and hydrocephalus in mice

GSE125239: Autophagy impairments in directly reprogrammed neurons in patients with idiopathic Parkinsons disease

GSE122088: Loss of the FAT1 tumor suppressor promotes resistance to CDK4/6 inhibitors via the Hippo pathway

GSE122230: Genome-wide gene-expression profile of mouse intestinal stem cells/progenitors/Paneth cells

GSE107646: Paired TCR and transcriptome analysis of single T cells characterizes clonally expanded human conventional and unconventional CD8+ T cells

GSE124286: Impact of dietary antigen on gene expression of Peyer's patch T cells

GSE125196: Impact on erythroid progenitor type on erythroid differntiation

GSE129073: Microbiota-driven transcription signatures in lung stroma cells

GSE116017: CDK12 Regulates DNA Repair Genes by Suppressing Intronic Polyadenylation

GSE129387: Gene expression of blood and cerebellum of Mecp2-null and WT male mice

GSE133397: Transcriptomic analysis of resting or activated human CD226- and CD226+ effector memory CD8+ T cell subsets isolated from the peripheral blood of healthy donors.

GSE106678: Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus RNA-Seq

GSE106140: Dynamic remodeling of translation programs drives hepatocyte proliferation during liver regeneration

GSE124259: Dlk1-Mediated Temporal regulation of Notch Signaling is Required for Differentiation of Alveolar Type II to Type I Cells during Lung Repair

GSE128696: Gene expression comparison of resting human peripheral-blood NK cells and activated counterparts

GSE139996: The metabolite receptor SUCNR1 in oxidative stress-induced age-related macular degeneration

GSE138591: Single myofiber RNA-seq of young and old mice

GSE154583: Comprehensive analyses of B cell compartments across the human body reveal novel subsets and a gut resident memory phenotype

GSE131840: Transcriptomic analysis of effect of oncolytic measles virus (MV) on transformed and non-transformed bone marrow-derived mesenchymal stem cells (MSCs)

GSE114099: Transcriptomic Analysis of Wild Type and FOXA2-/- ES-derived Pancreatic Progenitors