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Sequencing-based assays (Page 49)

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Explore curated data sets and assays

Sequencing-based assays (Page 49)

GSE90797: Molecular reprogramming of granulocyte/macrophage progenitor (GMP) clusters upon induction of BCR/ABL oncogene

GSE97078: AG-221 as an effective and on-target therapy in IDH2 mutant AML

GSE87419 (mouse): Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex (RNA-seq)

GSE136690: Transcriptional profiling of neurons in the thalamus of a Slc17a6-TRAP (JX883) mouse line

GSE143695: Gene expression profiles of WT and Vil-CREPTKO intestinal cyrpts

GSE154614: Gene expression and polysome profiling data of E-Myc B-lymphoma cells

GSE154551: Notch activity determines a common hepatocellular carcinoma subtype with unique molecular and clinicopathologic features [L-NICD]

GSE134864: H2BG53D mutation in PDAC

GSE87592: Expression profiling by high throughput sequencing and transcriptome-wide association study study the metabolic mechanism of the formation of atorvastatin lactone and the risk to statin-induced myotoxicity

GSE86418: Transcriptomic profiling of dorsal root ganglia of transgenic sickle and control mouse models for studying genetic signatures of pain in sickle cell disease

GSE140217: The biochemical basis of microRNA targeting efficacy [4]

GSE86338: RNA profiling to describe the transcriptional change during white fat browning, brown fat activity and inactivation

GSE80187: Genome-wide analysis of tumor suppressive programs during p53-induced regression of Myc-driven lymphomas [RNA-Seq]

GSE86336: m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover

GSE79137: Repression of interstitial cell identity in nephron progenitor cells by Pax2 establishes the nephron-interstitium lineage boundary throughout mammalian kidney development

GSE85887: The impact of YTHDF2 knockout on the distribution of 5-methylcytosine in RNA

GSE131555: Capture of mouse and human stem cells with features of formative pluripotency [mouse, RNA-Seq 2]

GSE116096: Gene expression in isolated epithelial and stromal cells from day 4 pregnant uterus

GSE90795: Transcriptomic analysis of intestinal epithelial Sox4 knockout

GSE89056: Integrative analysis of reprogramming human fibroblast cells to nave pluripotency [RNA-seq]

GSE92910: Gene expression profiling of histone deacetylase inhibition in triple-negative breast cancer

GSE81809 (mouse): Chemical Enhancement of Direct Cardiac Reprogramming In Vitro and In Vivo

GSE86297: Transcription and chromatin determinants of the rate of de novo DNA methylation in oocytes

GSE86396: Transcription Factors Sp8 and Sp9 Coordinately Regulate Olfactory Bulb Interneuron Development [RNA-Seq]

GSE79260: A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus

GSE86316: Messenger RNA expression after silencing or inhibition of MEN1in MCF-7 breast cancer cells

GSE85891: Keratinocytes contribute intrinsically to psoriasis upon loss of Tnip1 function

GSE86113: Investigating B cell stimulation in ubiquilin-1 KO mice

GSE86417: RNA-seq of mouse embryonic stem cell states expressing Esrrb, Tbx3, and Zscan4

GSE97519: Single-cell RNA-seq of NR5A1-eGFP positive cells of the developing mouse testis from E10.5 to E16.5

GSE87104: RNA-seq Analysis of Wild Type and Ptpn11-deficient cerebellar Transcriptomes

GSE89035: Interruption of Hepatic Glucagon Signaling Reveals a Hepatic--Islet Cell Axis Where L-Glutamine Stimulates -Cell Proliferation

GSE83217: RNA sequencing to identify common targets for regulation of cognition

GSE104910: Differentially Expressed Genes upon Knockdown of ZRANB1 or EZH2 in LM2 Cells

GSE132776: NHLRC1 re-expression in cancer cells

GSE80326: Mouse oocytes suppress mir-322-5p expression in ovarian granulosa cells

GSE84987: Molecular role of the PAX5-ETV6 oncoprotein in promoting B cell acute lymphoblastic leukemia

GSE89057: RNA-seq of SOX5 overexpressing primary human neuronal progenitors

GSE98139: Whole blood gene expression in adolescent Chronic Fatigue Syndrom (CFS) by RNA-Seq

GSE95024: p53-induced apoptosis is specified by a translation program regulated by PCBP2 and DHX30.

GSE89677: Long-term expansion of functional pancreatic islets on a laminin-521 matrix and curative transplantation into diabetic mice

GSE130003: Gastric squamous-columnar junction contains a large pool of cancer-prone immature osteopontin responsive Lgr5-CD44+ cells

GSE84794: Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding [RNA-seq]

GSE86333: SETBP1-WT and SETBP1-G870S transcriptional profiles [RNA-Seq]

GSE87110: Transcriptional response of human endocervical epithelial A2EN cells to infection with wild-type or CpoS-deficient Chlamydia trachomatis L2/434/Bu

GSE85606: Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [RNA-seq]

GSE99331: Germline Chd8 haploinsufficiency alters brain development in mouse

GSE89775: Loss of EGFR-DDEF1 signaling in metastatic and unresectable hepatoblastoma

GSE80044: RNA-seq of Lmnb1-/- and Lmnb1+/- olfactory lineages

GSE90725: Obesity Alters the Composition and the Activity of the Hematopoietic Stem Cell Compartment Through Dysregulation of Gfi1 Expression (Bulk RNA-Seq)

GSE90470: Id2 controls specification of Lgr5+ intestinal stem cell progenitors during gut development

GSE86538: ChIP-seq of ER and RUNX2 in MCF7 breast cancer cell lines

GSE89683: Dynamic changes in chromatin states during specification and differentiation of adult intestinal stem cells [rnaseq]

GSE87890: Molecular profiling of dorsal raphe nucleus Vgat and VGLUT3-expressing neurons

GSE85908: Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation

GSE80288: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Msx1-/- tooth mesenchyme Transcriptomes

GSE95822: Length-independent telomere damage drives cardiomyocyte senescence

GSE97615: Human Oral and Cutaneous Wound Healing Transcriptomes

GSE86400: Transcriptome of mouse preimplantation development [C57BL/6 x Cast; WT]

GSE86470: Transcriptional profiling of mouse and hamster oocytes

GSE86491: Comprehensive RNA sequencing of healthy human endometrium at two time points of themenstrual cycle

GSE80354: Gata6 promotes hair follicle matrix progenitor cell renewal by genome maintenance via Edaradd/NF-B

GSE86457: Genes and mechanisms regulated by androgens as possible contributors to the male excess observed in autism [RNA-Seq]

GSE86190: Effect daunorubicin treatment on the transcriptome of HCT116 cells [RNA-seq]

GSE87550: Rpph1 regulated Cdc42 and modulated hippocampal pyramidal neurons by competing endogenous miR-330-5p

GSE147152: Genome-wide analysis of gene expression in EBV(+) GC cell lines [RNA-seq]

GSE115769: RNA-Sequencing of carnosine treated wild-type BDF1 (WT) and transgenic Thy1-aSyn mice

GSE112041: RNA-seq in Smchd1 wild-type and Smchd1 null presomitic mesoderm from E9.5 embryos

GSE114062: Comparison between a mouse line selected for high voluntary wheel running and control line in two brain regions, cerebellum and striatum

GSE116469: Transcriptomic changes from iPSC-derived RPE due to MFRP and C1QTNF5

GSE128243: Single-cell RNA-seq of human peripheral blood NKT cells

GSE128074: Single-cell RNA sequencing of basophils from mouse bone marrow

GSE120582: The mole genome reveals regulatory rearrangements associated with adaptive intersexuality (RNA-Seq)

GSE114509: RNA-seq of the lacrimal gland epithelial tissue in control vs Pea3-depleted tissue in mouse embyro

GSE112772: Sufu and Spop cooperate to suppress SHH medulloblastoma tumorigenesis via regulation of Gli2 protein stability [RNA-seq]

GSE135984: BMP2 and GSK126 synergize to induce expression of osteogenic genes

GSE111876: GABA regulates release of inflammatory cytokines from peripheral blood mononuclear cells and CD4+ T cells and is immunosuppressive in type 1 diabetes

GSE114883: Transcriptomic profiling of mock-infected primary CD4+ T cells and a model of HIV latency treated with suberoylanilide hydroxamic acid (SAHA) and Romidepsin (RMD)