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Sequencing-based assays (Page 70)

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Explore curated data sets and assays

Sequencing-based assays (Page 70)

GSE120415: RNAseq in BAP1 KO primary mouse mesothelial cells

GSE118809: Synergy of Nras mutation and Nup98-Hoxa10HD gene fusion efficiently preserves the stemness of single hematopoietic stem cells after feeder-free culture

GSE114948: Signal sequences in the viral genome regulate the generation of copy-back defective viral genomes

GSE123999: Next-generation sequencing analysis of Abcg2-expressing vascular endothelial stem cells and mature endothelial cells

GSE115579: RNA-Seq analysis of hearts from NBCe1 Na-HCO3 cotransporter cardiac conditional knockout (K) vs wild-type (W) mice

GSE105806: STAT4 and T-bet control follicular helper T cells development in viral infections [RNA-seq]

GSE129653: HNF1A deficiency impairs -cell fate, granule maturation and function (scRNA-seq of 271 hESC-derived cells: Differentiation day 25)

GSE106097: Gene expression changes in fibroblasts with constitutively active Nrf2 reflect a senescence-associated secretory phenotype (SASP)

GSE110239: Differential Gene expression in the mouse mammary tumors of PyMT-Malat1 wild-type (WT), PyMT-Malat1 knockout (KO) and PyMT-Malat1 knockout with Malat1 transgene expression (TG)

GSE114434: Tissue-resident macrophages in the intestine are long-lived and defined by Tim-4 and CD4 expression

GSE114789 (human): UPA-Seq: Prediction of functional lncRNAs using the sensitivities to UV-crosslinking

GSE147790: Vascularcontribution to 16p11.2 deletion autism syndrome modeled in mice

GSE116713: Maternal Eed knockout causes loss of H3K27me3 imprinting and random X-inactivation in the extra-embryonic cells

GSE115339: Transcriptional profile of Th17 cells: The role of glycolysis

GSE142229: Continued Bcl6 expression prevents the transdifferentiation of established Tfh cells into Th1 cells during acute viral infection

GSE123080: Mus musculus Gata2 +9.5 Ets C>T transition untreated and 10 days post 5-FU LSK cells

GSE122465: Single-cell RNA-seq of frequent and rare populations in mouse bone marrow

GSE117127: Long noncoding RNA signatures induced by TLR7 and type I IFN signaling in activated human plasmacytoid dendritic cells

GSE120268: RNA-seq of MDA-MB-231 siCt and siAXL

GSE117106: Gene expression changes in THP1 cells at day 2 and 4 following shRNA knock-down of RUVBL2

GSE118663: iNKT cells RNA-Seq (WT vs SFR KO)

GSE107655: A comprehensive map coupling distribution of histone modifications with gene regulation in adult in vivo midbrain dopamine neurons [RNA-Seq]

GSE113146: Inhibition of EGFR signaling downregulates K-RAS mutated activity

GSE115451: Expression and transcript isoform profiling of reprogramming cells expressing a Sox2 mutant lacking a putative RNA binding motif [RNA-Seq]

GSE121292: Sex chromsomes affect gene expression of autoantigen specific CD4+ T cells

GSE115576: WDR68 is essential for the PRC1-AUTS2 complex activating role and for stem cell differentiation

GSE123133: Transcriptonal and epigenetic changes of adult liver cells in vivo and in vitro

GSE117129: Identification of an Early Unipotent Neutrophil Progenitor with Pro-Tumoral Activity in Mouse and Human Bone Marrow

GSE106174: Enhanced glucose uptake in adipocytes despite deteriorating insulin signaling and increased autophagic flux with high fat feeding in mice

GSE121332: Estrogen receptor beta enhances chemotherapy response of GBM cells by down regulating DNA damage response pathways

GSE106790: G9a regulates temporal preimplantation developmental program and lineage segregation in blastocyst

GSE119962: Twist1-Haploinsufficiency Selectively Enhances the Osteoskeletal Capacity of Mesoderm-derived Parietal Bone through Downregulation of Fgf23

GSE121607: Global gene expression analysis of human monocyte-derived dendritic cells (DCs) treated with HMGN1 (N1) and R848 alone or in combination.

GSE110265: Single cell RNA Sequencing Analysis of Gene Expression Profile in Dgcr8 Conditional KO Embryonic Hearts

GSE127234: Transcriptome profiling of CD8+ T cells exposed to vehicle or IL-1b treatment in vivo

GSE115403: Inflammation-produced TNF protects hematopoietic stem cells from necroptosis and promotes hematopoietic regeneration

GSE115237: A transcription factor addiction imposed by an oncogene promoter sequence [RNA-seq]

GSE129687: RNA-seq assessment of quadriceps muscle and brown adipose tissue in PPARGC1A uORF-TAA mice

GSE106369: The histone acetyl-tranferase MOF is required for metabolic function in the liver .

GSE113983: Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization [RNA-seq]

GSE110300: Next Generation Sequencing Provides Transcriptional Analysis for Estradiol Effects in Skeletally Immature (7-weeks old) Female WT and Estrogen Receptor Alpha Knockout Mice

GSE120393: Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development

GSE115244: Gamma entrainment binds higher order brain regions and alleviates neurodegeneration

GSE117510: Lin28/let-7 axis regulates the timig of cession of nephrogenesis

GSE106365: The transcriptome difference analysis after overexpression of lncRNA-smad7 in skeletal muscle damage

GSE115698: Histone deacetylase inhibitors in alveolar rhabdomyosarcoma

GSE115670: yylncT acts as a gatekeeper of the mesodermal transcriptional program by local modulation of DNMT3B [mouse]

GSE113474: RNA Sequencing of adult high grade glioblastoma tumors

GSE114464: Mesoderm-derived PDGFRA+ cells regulate emergence of hematopoietic stem cells in the dorsal aorta

GSE123165: Codon and amino acid identity are major determinants of mRNA stability in humans

GSE113980: CD47 expression in natural killer cell regulates homeostasis and modulates immune response to lymphocytic choriomeningitis virus

GSE113221: RNAseq of Wild Type and Prdm1/c-Maf cDKO CD8+ Tumor infiltrating lymphocytes isolated from B16F10 melanoma

GSE130009: RNA sequencing of single LN cells sorted from virus-activated CD4 T clusters

GSE115477: In vivo replacement of damaged bladder urothelium by Wolffian duct epithelial cells

GSE115240: FGF2 induces migration of human bone marrow stromal cells by increasing core-fucosylations on N-glycans of integrins

GSE114514: Modulation of SF3B1 causes global intron retention and downregulation of the B-cell receptor pathway in chronic lymphocytic leukemia

GSE106462: The transcription factor c-Maf is a positive regulator of IL-10 with context-specific roles in CD4+ T cell effector function and in vivo consequences [RNA-seq in vivo]

GSE122688: Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs (RNAseq)

GSE116765: Pleiotropic impact of DNA-PK in cancer and implications to therapeutic strategies

GSE129701: Super-enhancer redistribution as a mechanism of broad gene dysregulation in repeatedly drug-treated cancer cells [dataset 2]

GSE115612: scSLAM-seq reveals core features of transcription dynamics in single cells

GSE120973: Single-cell RNA-seq Reveals a Developmental Hierarchy and Oncogenic Networks for Initiation of Medulloblastoma [RNA-Seq]

GSE122380: Dynamic genetic regulation of gene expression during cellular differentiation

GSE121148: Three Transcription Factor Functions Empower Progression from Nave to Formative Pluripotency [RNA-Seq]

GSE115686: Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria

GSE110263: Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency [RNA-seq]

GSE118654: Human pluripotent stem cell-derived brain tumor model uncovered embryonic stem cell signature as a key driver in atypical teratoid/rhabdoid tumor (RNA-Seq)

GSE106427: BATF regulates the expression of Nfil3, Wnt10a and miR155hg for efficient induction of antibody class switch recombination

GSE118951: A novel CD4+ T cell population expanded in SLE blood provides B cell help through IL10 and succinate

GSE119508: The ovulatory signal precipitates LRH-1 transcriptional switching mediated by differential chromatin accessibility.

GSE129637 (mouse): MLL-Menin inhibition reverses pre-leukemic progenitor self-renewal induced by NPM1c mutations [RNA-Seq]

GSE115649: Gene expression profiling of Dermal Papilla (DP) cells isolated from wild type (WT) and DP-specific Smo gain-of-function (Smo*) mutant mice during both telogen (at P20) and anagen (at P28).

GSE116744: RNA-Seq analysis of long-term estrogen-deprived (LTED) MDA-MB-134VI (MM134) and SUM44PE (SUM44) ILC cell lines

GSE134596: RNA-seq analysis of the transcriptional profile of SiHa cells with CNN3 interference.

GSE107759: ADAM17 is required for EGF-R induced intestinal tumors via IL-6 trans-signaling

GSE106423: Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System

GSE117485: RNA-Seq in two Ewing sarcoma cell lines: A673 and SKNMC

GSE116130: A human TH17 population with a tissue-resident signature in healthy and inflamed oral mucosal tissues [10x]