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Sequencing-based assays (Page 71)

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Explore curated data sets and assays

Sequencing-based assays (Page 71)

GSE115659: Next generation sequencing on knockdown of AC093323.3 in lung cancer cells

GSE117134: Dissecting the autonomy of the liver circadian clock

GSE121276: CDC7 inhibition induces a senescence-like state in Hep3B and Huh7 cells

GSE120037: Dissection of uniparental reproduction barriers in mice using haploid embryonic stem cells [RNA-Seq]

GSE124694: Arid1a loss drives nonalcoholic steatohepatitis in mice via epigenetic dysregulation of hepatic lipogenesis and fatty acid oxidation

GSE119215: The effect of genetic background on cognitive and pathological traits: AD-BXD [dataset 2]

GSE115541: Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development

GSE117149: Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1.

GSE121322: Gene expression profiling of wiltype and Ctr1 knockout MEFs with depleted cellular Cu levels

GSE118656: LXR-dependent gene expression in mouse bone marrow derived macrophages

GSE124380: Next generation sequencing analysis of transcriptomes in MDA-MB-231 and LM2-4175 cell lines

GSE106797: ASXL2 is recurrently mutated in t(8;21) AML and regulates hematopoietic development [RNA_Seq_Asxl2_knockout]

GSE117143: UBC9 knockdown in bladder cancer T24 cell lines

GSE116782: A robust qualitative transcriptional signature for the early diagnosis of gastric cancer

GSE122164: CEBPA Dysfunction Intiates CSF3R Mutant Acute Myeloid Leukemia Through Disruption of Myeloid Lineage Enhancers (RNA-seq - simultaneous)

GSE108575: Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia

GSE115687: Domain-focused CRISPR-screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells

GSE121137: Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells

GSE121621: ZFP90 promotes colorectal carcinogenesis and stemness [RNA-seq]

GSE122489: Expression data for murine hepatocellular carcinoma in WT and Top1mt-/- mice

GSE121343: A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism: Liver RNA profiles of mice injected with control, Mafg and LncIRS2 LNA.

GSE107053: Tumor-associated macrophages derived from circulating inflammatory monocytes degrade collagen through cellular uptake

GSE115710: The RNA exosome contributes to gene expression regulation during stem cell differentiation [CAGE]

GSE122562: Transgenic mice expressing tunable levels of DUX4 develop characteristic facioscapulohumeral muscular dystrophy-like pathophysiology ranging in severity

GSE117121: To investigate the decay constants (half-lives) of transcript isoforms generated by alternative polyadenylation in proliferating and quiescent cells

GSE111604: Defects in the alternative splicing-dependent regulation of REST cause deafness - [mouse utricles].

GSE107832: Epigenetic control of transposable elements in the mouse male germ line by Tex15

GSE116722: Gene expression, epigenetic modification, and chromatin landscape of skin dermal cells in different body positions [RNA-Seq]

GSE122536: Transcriptomic analysis to functionally map the intrinsically disordered domain of EWS/FLI [Experiment 2]

GSE121162: The differences in local translatome across distinct neuron types is mediated by both baseline cellular differences and post-transcriptional mechanisms

GSE111125: Therapeutic effects of Rosuvastatin in hypercholesterolemic prediabetic mice in the absence of low density lipoprotein receptor

GSE111666: Quantitative Analysis of Neurog2 Heterozygote, Mutant and and Mash1KI Retinal Transcriptomes by RNA Sequencing

GSE121382: Transcriptome Analysis of CircMRPS35 mediated mRNA expression profiles

GSE115523: The role of Twist1 in mutant huntingtin-induced transcriptional alterations

GSE108057: Lysosomal signaling licenses embryonic stem cell differentiation via inactivation of Tfe3

GSE115495: Macrophage responses to MDR M.tuberculosis infection

GSE117942: RNA-seq of breast cancer cell lines post ligand treatment I

GSE122761: Acetylation of spliceosome protein PHF5A modulates stress responses and colorectal carcinogenesis through alternative splicing mediated upregulation of KDM3A

GSE115758: Loss of Sirt2 increase and prolongs a chemically induced pancreatitis permissive phenotype and induces spontaneous oncogenic Kras mutations in mouse

GSE115526: Molecular profiling of reticular gigantocellularis neurons

GSE120073: Lung adenocarcinoma UNC0638 gene expression

GSE117225: Single cell RNA sequencing of primary-isolated erythroid progenitors [BFUE & CFUE]

GSE132538: Dissecting the regulatory strategies of NFkB RelA target genes in the inflammatory response reveals differential transactivation logics [MEF]

GSE115550: Spatially Constrained Tandem Bromodomain Inhibition Bolsters Sustained Repression of BRD4 Transcriptional Activity for TNBC Cell Growth

GSE116773: Analysis of Notch2 conditional knockout (CKO) and wild type mouse hippocampal stem cells

GSE130054: Priming mobilization of hair follicle stem cells triggers permanent loss of regeneration after alkylating chemotherapy

GSE115739: Role of GATA in DN3 stage thymocytes

GSE112352: Gene expression profiling of the olfactory tissues from sex-separated and sex-combined female and male mice

GSE114963: RNA-seq profiling of mouse embryonic fibroblasts treated with WM-2474 or DMSO

GSE115730: Mitofusins Regulate Lipid Metabolism to Mediate the Development of Lung Fibrosis

GSE115916: Genetic Background and Gender Influent Salt-Evoked Hypertension in Prostacyclin Receptor-Deficient and Microsomal Prostaglandin E Synthase-1-Deficient Hyperlipidemic Mice

GSE121355: A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers

GSE107152: Haematopoetic RNA-seq from ultra low input

GSE135985: Acquisition of a unique mesenchymal precursor-like blastema state underlies successful adult mammalian digit tip regeneration

GSE116155: Transcriptome of day 6 EBs [WT, hWDR5iRescue,Wdr5 KO clone #3 with or without early (T12h) and late rescue (T48h)]

GSE119549: mRNA-seq of bypass grafts in mice, utilizing the vena cava as carotid artery bypass graft

GSE107180: Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury [rodent DRG]

GSE115522: Transcriptional dysregulation in a primary cortical neuron model of Huntington's disease

GSE120012: RNA-seq expression profiling of cardiac macrophages and splenic monocytes from nave and CAWS challenged mice

GSE107153: Single-cell RNA from Haematopoetic progenitor cells

GSE115487: CXCL4 links inflammation and fibrosis through transcriptional and epigenetic reprogramming of inflammatory monocyte-derived cells [RNA-seq]

GSE117976: Optic atrophy 1 controls human neuronal development by preventing aberrant nuclear DNA methylation

GSE115743: GATA3 abundance is a critical determinant of T cell receptor beta allelic exclusion [GATA3 overexpression]

GSE119952: Profiling of tumor-associated macrophages (TAM) after anti-MerTK treatment

GSE120269: Interleukin-1 induces mitochondrial DAMP production to activate STING-dependent innate immune programs

GSE107705: iRhom2 Promotes Lupus Nephritis through ADAM17-Dependent TNF- and EGFR Signaling

GSE109395: Xist RNA antagonizes the chromatin remodeler, BRG1, from the inactive X chromosome

GSE122116: Molecular characterisation of muscle and spinal cord tissues from young, old and old exercised C57BL/6 wild type male mice

GSE119970: RNA-seq of three Ewing sarcoma cell lines (A673, SK-N-MC, RDES), transfected with either siControl or siMYBL2.

GSE115497: Interferon Regulatory Factor 8 (IRF8) Deficiency Promotes Osteoclast Transcriptional Program

GSE110614: Coronary arterial development is regulated by a Dll4-Jag1-EphrinB2 signaling cascade

GSE117972: Developmentally regulated isoform of HNF4 reprograms the adult liver

GSE137964: Genome-wide transcriptome analysis of organotypic rafts derived from human papillomavirus type 16 infected primary keratinocytes [3D raft]

GSE117155 (mouse): LEDGF and HDGF2, histone H3K36 methyl-binding proteins that assist RNA polymerase II transcription through nucleosomes

GSE113811: Single cell RNAseq of Wild Type and IL27ra KO Tumor infiltrating lymphocytes isolated from B16F10 melanoma batch 5

GSE120162: TFIIIC binding to Alu elements controls gene expression via chromatin looping and histone acetylation

GSE120225: Channelopathy pathogenesis in a human neural cell model of Angelman Syndrome

GSE122401: Proteogenomic characterization of human early-onset gastric cancer