Explore curated data sets and assays

Pluto has a large database of published data, available to explore, conduct your own analysis, and view QC reports.

Sequencing-based assays (Page 66)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 66)

GSE114607: Human Organ-Specific Endothelial Cell Heterogeneity

GSE111305: GSF1243: RNA-seq data of adipocytes treated with DNMT1 inhibitor, guadecitabine (100nM), for 3 days

GSE111970: CRISPR-Cas9-based editing of histone H3 arginine 17 reveals its methylation-dependent regulation of Yap signaling and early mouse embryo development (RNA-seq data set)

GSE118290: RNA-seq in livers of wild-type (WT) controls, PiZ and PIZ mice deleted for Chop (PiZ/Chop-/-)

GSE134442: miR-4711-5p regulates the cancer stemness and cell cycle progression through direct binding to KLF5, MDM2 and TFDP1 in colon cancer cells

GSE112774: Genetic editing of colonic organoids provides a molecularly distinct and orthotopic preclinical model of serrated carcinogenesis.

GSE111906: Patient iPSC-derived neural stem cells display progressive enlargement of lysosomes and disruptions of glycosaminoglycan pathway and autophagy in concordance with clinical severity of Mucopolysaccharidosis I

GSE112348: Evaluation of the post-stroke transcriptome of the mouse cortex using genome-wide RNA-seq

GSE116428: Sexual Dimorphism of Preeclampsia-Dysregulated Transcriptomic Profiles and Endothelial Function in Fetal Endothelial Cells

GSE104127: Next Generation Sequencing Analysis of WT and Hectd3/ BMDMs during F. novicida infection

GSE112087: Systemic Lupus Erythematosus patient blood with controls

GSE111568: miR-15/16 restrain cell cycle and memory T cell accumulation

GSE107090: The thioredoxin-1 system is essential for fueling DNA synthesis during T cell metabolic reprogramming and proliferation

GSE111703: Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity

GSE115125: Single cell transcriptomic analysis (InDrops) of mouse FoxP3+ regulatory CD4+ T cells isolated from spleen and muscle after injury

GSE114717: RNA-sequencing analysis of regulatory T cells differentiated in presence or absence of CPI-1205

GSE112946: Transcriptional and chromatin profiles of duodenum epithelium upon HNF4 loss in mice by RNA-seq and ChIP-seq

GSE119660: RNA-seq profiling of mouse transformed culture cells as Pax6 locus cell models

GSE129612: Cell-specific ablation of Hsp47 defines the collagen producing cells in the injured heart

GSE117605: Transcriptional changes in mouse models in SCA3

GSE117720: A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

GSE129619: Disease modelling of core pre-mRNA splicing factor haploinsufficiency

GSE113631: Transcriptome profiling of quiescent muscle stem cells in vivo

GSE105110: Generation of Tumor Antigen-Specific iPSC-Derived Thymic Emigrants (iTE) using a Novel 3D Thymic Culture System

GSE112923: RNA-seq profiling of human thymic Tregs cultured in conditions containing Th1-cytokines, Retinoic acid or control conditions

GSE112400: Polycomb repressive complex 1 (PRC1) role in skin epithelium development [HF I53A]

GSE111634: Gene expression profiling in human nasal epithelial cells (HNEpCs) stimulated with eosinophil-derived neurotoxin (EDN)

GSE112221: Integrating the Epigenome to Identify Novel Drivers of Hepatocellular Carcinoma

GSE115601: RNA seq in human gastroparesis

GSE113343: RNA-seq reported in "Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria"

GSE120449: Mitochondrial complex III is essential for regulatory T cell suppressive function. [gene expression/RNA-seq]

GSE117387: Somatic loss of WWOX is associated with TP53 perturbation in basal-like breast cancer

GSE113341: Genome-wide expression from the esophageal biopsies of subjects with and without eosinophilic esophagitis

GSE112859: Targets mediated microRNA arm-imbalance promotes gastric cancer progression

GSE111626: Targeting RIP1 in tumor associated macrophage induced changes in macrophage polarization

GSE112935: RNA-seq analysis dataset: FACS-sorted Ptf1a-lineage cells from E14.5 hypothalamus of Ptf1a hetero and homozygous mice

GSE113957: Predicting age from the transcriptome of human dermal fibroblasts

GSE111752: Droplet based single cell RNA sequencing profiles of a murine model of type-1 diabetes

GSE111916: Layer-specific molecular expression in neocortical astrocytes

GSE104689: Maturation of hematopoietic stem cells from pre-hematopoietic stem cells is accompanied by upregulation of programmed death ligand 1

GSE102982: JNK activation of BIM promotes hepatic oxidative stress, steatosis and insulin resistance in obesity

GSE116432: Glucocorticoids enhance the anti-leukemic activity of FLT3 inhibitors in FLT3 mutant acute myeloid leukemia

GSE121247: Transcriptome analysis in shNull and shSETD8 medulloblastoma cells

GSE112937: Tissue-restricted adaptive type-2 immunity is orchestrated by OX40L expression on group 2 innate lymphoid cells

GSE103403: Oct4 regulates the embryonic axis and coordinates exit from pluripotency and germ layer specification in the mouse embryo

GSE121224: An enhancer in the middle of the Ig locus orchestrates nuclear architecture to generate a diverse antigen receptor repertoire

GSE120463: RNAseq analysis on E14.5 cortical material from mouse, Tcf4-ko line vs WT littermates.

GSE134405: Temporal dissection of breast cancer brain metastases

GSE111938: Next Generation Sequencing Analysis of Wild Type Mouse Embryonic Fibroblast (MEFs) Transcriptomes Stimulated by Viral Mimics

GSE114895: Thymic tuft cell single-cell mRNA analysis

GSE111951: 4sU metabolic labeled transcripts in mESCs

GSE114724: Single-cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment - 5' RNA sequencing and TCR sequencing

GSE111822: Identification of predictive markers for human mesenchymal stromal cells chondrogenic potential is challenged by donor variability

GSE112057: Whole Blood Transcriptome Profiling in Juvenile Idiopathic Arthritis and Inflammatory Bowel Disease

GSE103683: GLI2-mediated mesenchymal Hh signaling induces stem cell niche signals in intestinal development and tumorigenesis [RNASeq]

GSE129643: Skeletal Muscle Transcriptomics

GSE111824 (mouse): Zfp281 shapes the transcriptome of trophoblast stem cells and is essential for placental development

GSE114213: ChIPseq and RNAseq analysis of T47D cells with/without silencing TRPS1/CHD4

GSE113543: Zinc Finger Protein 521 regulates early hematopoiesis through cell extrinsic mechanisms in the bone marrow microenvironment

GSE131581 (mouse): Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [RNA-seq]

GSE111824 (human): Zfp281 shapes the transcriptome of trophoblast stem cells and is essential for placental development

GSE117843: Microbiota Depletion Impairs Adaptive Thermogenesis of Both Brown and Beige Adipose Tissue

GSE117055: Neuronal heterogeneity and stereotyped connectivity in the auditory afferent system

GSE119699: Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease (human)

GSE109740: Transcription-associated histone pruning demarcates macroH2A chromatin domains

GSE114772: KLF4, a gene regulating prostate stem cell homeostasis, is a barrier to malignant progression and predictor of a good prognosis in prostate cancer

GSE114818: Cecal transcriptome by Next Generation Sequencing of WT C57Bl/6 mice treated with water (vehicle) or with antibiotics (AIMD) to induce microbiome depletion .

GSE112787: Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs

GSE114739: Impact of cecal ligation and puncture (CLP) on splenic NK1.1+CD3- gene expression [RNA-seq]

GSE156836: A Thalamic Orphan Receptor Drives Variability in Short Term Memory

GSE129975: Atrx deletion in neurons leads to sexually-dimorphic dysregulation of miR-137 and spatial learning and memory deficits

GSE117066: Next Generation Sequencing Facilitates Quantitative Analysis of ischemic postconditioning (IPO) to attenuate hepatic ischemia-reperfusion injury in mice

GSE103618: Direct reprogramming of fibroblasts into antigen-presenting dendritic cells

GSE114845: Systems genetics of sleep regulation

GSE135943: Assessment of the Mode of Action Underlying the Effects of GenX in Mouse Liver and Implications for Assessing Human Health Risks

GSE112797: Kinetic analysis of TGFbeta-induced EMT in NMuMG/E9 cells

GSE111739: Opposing roles of miR-290 family and muscleblind-like proteins in the regulation of embryonic stem cell-specific alternative splicing and gene expression program

GSE118863: Transcriptome analyses of somatotropes and lactotropes reveal novel regulators of cell identity in the pituitary