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Sequencing-based assays (Page 65)

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Explore curated data sets and assays

Sequencing-based assays (Page 65)

GSE109608: RNA-Guided Transcriptional Silencing In Vivo with S. aureus CRISPR-Cas9 Repressors

GSE109984: Dissection of memory response B cell populations by single cell RNA-seq

GSE111118: mRNA profiles of active hematopoieitc stem cells

GSE113081: Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus

GSE114710: Impact of Escherichia coli K12 and O18 on human platelets: effects on platelet activation, spliced platelet RNAs and proteins

GSE110328: Effects of gene-by-environment interaction on the transcriptome of mice deficient for tryptophan hydroxylase 2 [RNA-seq]

GSE111272: Global transcriptome analysis of HAP1 cells

GSE101546: SETDB1 controls T helper cell lineage integrity by repressing endogenous retroviruses

GSE111120: Deep transcriptomic analysis of human vascular cells identifies novel risk genes for common vascular diseases

GSE122446: Age-dependent decline of TET1-mediated DNA hydroxy-methylation impairs myelin regeneration after injury

GSE111910: WT and Hira-null undifferentiated mESCs and day15 differentiated cardiomyocytes

GSE109913: Gene expression profiling on alveolar epithelial cells from mice intratracheally instilled with or without bleomycin or LPS.

GSE108353: A Forward Genetic Screen Targeting the Endothelium Reveals a Regulatory Role for the Lipid Kinase Pi4ka in Myelo- and Erythropoiesis [mutant]

GSE110495: Therapeutic targeting of the pre-metastatic stage in human brain metastasis

GSE132672: Comparison of Cortical Organoids to Human Cortex Identifies Cellular Identity and Maturation Differences

GSE111292: RNA-Seq analysis of murine pro-B BAF3 cells transfected with oncogenic form of receptor tyrosine kinases

GSE112059: Differentially expressed genes in HUVEC following miRNA-146a overexpression

GSE100599: Genome-wide Regulation of Electro-acupuncture on the Neural Stat5-loss-induced Obese Mice

GSE117712: Inhibition of casein kinase 2 disrupts differentiation of myeloid cells in cancer and enhances the efficacy of immunotherapy in mice

GSE111862: PIMT/NcoA6IP deletion in the mouse heart causes delayed cardiomyopathy attributable to perturbation in energy metabolism

GSE111977: Efficient generation of human CA3 neurons and modeling hippocampal neuronal connectivity in vitro (bulk)

GSE104473: ATAC-seq and RNA-seq from mouse mandible during distraction osteogenesis

GSE112491: BRG1 governs Glucocorticoid Receptor interactions with chromatin and pioneer factors across the genome

GSE122535: Transcriptomic analysis to functionally map the intrinsically disordered domain of EWS/FLI [Experiment 1]

GSE112201: RNA Misplicing in Fuchs Endothelial Corneal Dystrophy II

GSE122459: SLE PBMC RNA-seq

GSE103440: Demodifying RNA for Transcriptomic Analyses of Archival Formalin-Fixed Paraffin-Embedded Samples

GSE110351: Early lineage segregation of multipotent embryonic mammary gland progenitors [RNA-Seq II]

GSE114815: Reduction of Protein Kinase A-mediated Phosphorylation of ATXN1-S776 in Purkinje Cells Delays Onset of Ataxia in a SCA1 Mouse Model.

GSE100535: Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP [RNA-seq]

GSE113323: ERK1/2-RSK2 signaling is a developmental switch required for estrogen homeostasis

GSE112068: Study of dynamic transcriptome profiling in DNA damage-induced cellular senescence and transient cell-cycle arrest

GSE113194: Human ZNF341 deficiency underlies a recessive form of hyper IgE syndrome by disrupting STAT3 transcription-dependent STAT3 activity

GSE102313: Epigenetic profiling in Utx germline conditional knockouts and F1 offspring

GSE114850: RNA expression following TMPRSS11B overexpression or depletion

GSE114809: Three-dimensional brain-like microenvironments facilitate the direct reprogramming of fibroblasts into therapeutic neurons

GSE110178: LSD1 inhibition by tranylcypromine derivatives interferes with GFI1-mediated repression of PU.1 target genes and induces differentiation in AML

GSE102351: Response of murine lymphatic endothelial cells to stimulation with vascular enothelial growth factor-C (VEGF-C)

GSE111928: Determine genes differentially expressed between Raji cells and a subline which is resistant to APTO-253 (Raji/253R)

GSE112112: Nascent transcription of E14, PWWP2AKO, and PWWP2A/B DKO

GSE113817: Bach1 Regulates the Self-renewal and Mesendodermal Differentiation of Human Embryonic Stem Cells

GSE152032: Ablation of S1PR4 triggers CD8+ T cell expansion to reduce tumor growth and improve therapy

GSE102239: Transient postnatal lung changes on alveolar development after in utero and lactation exposure to nicotine

GSE139835: Ig repertoire of IgG+ murine memory B cells

GSE112735: A genome-wide screen identifies E2F6 as critical factor for TMZ chemoresistance in EGFRvIII expressing GBM (EGFRvIII RNA-seq)

GSE112886: Generation of esophageal organoids from human pluripotent stem cells and their use to study human development

GSE113804: Trans-differentiation of human adult peripheral blood T cells into neurons

GSE113476: RNAseq of Breast cancer PDX samples

GSE102294: CpG on carbon nanotubes inhibits migration of brain tumor cells while activating immune cells

GSE101767: Exome sequencing analysis of murine medulloblastoma models identifies Wdr11 as a potential tumor suppressor in Group 3 tumors

GSE112860: mRNA expression of murine hematopoietic stem cells and ex vivo murine MLL-AF9 cells deficient for total PRDM16 or f-PRDM16, and AF9 cells overexpressing individual PRDM16 isoforms

GSE113041: A non-canonical SWI/SNF complex underlies synthetic lethality in cancers driven by BAF complex perturbation [RNA-seq]

GSE102774: Expression regulation by Pcgf3 and Pcgf5 in mouse embryonic stem cells

GSE112973: Molecular subtype-specific immunocompetent models of high-grade urothelial carcinoma reveal differential neoantigen expression and response to immunotherapy

GSE103662: iMEF SDHC-loss RNA-seq time course

GSE111571: YAP and MRTF-A, transcriptional co-activators of RhoA- mediated gene expression, are critical for glioblastoma tumorigenicity

GSE117749: RNA-seq reveals novel PAF1c regulation of transcription in mouse hematopoietic progenitor cells

GSE113588: Profiling of lung tumor-infiltrating CD8 T cells according to their expression status of CD39

GSE124528: Gene expression analysis of immortalized human liver progenitor-like cells in culture

GSE112226: Transcriptional profiling of intestinal changes following APC loss

GSE102291: The microRNA-200 family mediates hair follicle development through coordinated regulation of cell adhesion and polarity

GSE103524: Gene expression profiles of parental and mutant SMB21 cells derived from drug resistance screen

GSE114173: Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (RNA-seq)

GSE115025: Transcriptional profile of monocytes in the colon in response to C. rodentium infection

GSE112171: Systems genetics identifies a macrophage cholesterol network that associates with physiological wound healing

GSE114894: Protein arginine methyltransferase PRMT1 is essential for palatogenesis

GSE113821: mRNA Seq of mouse tissues 9 days or 9 weeks after RYGB or sham surgery [9 days]

GSE117756: WNT signalling activity on epiblast cells (RNA-seq analysis)

GSE127736: Disruption of the exocyst induces podocyte loss and dysfunction

GSE114191 (mouse): Repurposing of promoters and enhancers during mammalian evolution

GSE104459: PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets [RNA-Seq]

GSE113837: Sequencing of Tumor infiltrating macrophages from B16f10 tumors in Wt and IFNR knockout mice

GSE105147: Translation control of the immune checkpoint in cancer and its therapeutic targeting

GSE121258: RNA-seq Analysis of Castration-Resistant Prostate Cancer With Knock-down of E2F1

GSE127758: Aged blood impairs hippocampal neural precursor activity and activates microglia via brain endothelial cell VCAM1

GSE111216: Mouse transcriptomics reveals extracellular matrix organization as a major pathway involved in inflammatory and neuropathic pain

GSE112143: Drp1 controls an effective T cells' immune-surveillance by regulating their migration, proliferation and cMyc-dependent metabolic reprogramming.

GSE111660: Transcriptome profiling of WT and Prdm16 mutant cells in embryonic mouse cerebral cortex.