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Sequencing-based assays (Page 64)

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Explore curated data sets and assays

Sequencing-based assays (Page 64)

GSE111894: Single-cell transcriptomic analysis of tissue resident memory T cells in human lung cancer [scRNA-seq]

GSE110577: Notch signaling facilitates in vitro generation of cross-presenting classical dendritic cells

GSE102685: Next Generation Sequencing Facilitates Quantitative Analysis of Control and FoxM1-knockdown C2C12 Transcriptomes

GSE112641: Comparative Transcriptomics of STR/ort, C57BL/6 and MRL/MpJ Knee Joints

GSE109285: Pancreatic Islet-Autonomous Signals Modulate Identity Changes of Glucagon+ -Cells

GSE116250: RNA-seq of heart failure in human left ventricles

GSE104238: Comparison of RNA expression of conditional Nmi knockout mammary epithelial cells to the wildtype control

GSE109788: Expression profiling analysis to identify POH1-regulated genes

GSE111029: Gene expression analysis in mouse mature T-cells either upon overexpression of the NICD or knockout of H2A.Z

GSE102688: Structural and mechanistic insights into ATRX-dependent and independent functions of the histone chaperone DAXX [RNA-seq]

GSE110380: Proximity-CLIP provides a snapshot of occupied cis-acting elements on RNA in different subcellular compartments on a transcriptome-wide scale

GSE100934: Whole transcriptome sequencing of mouse notochord-derived cells at developmental stages E12.5 and P0

GSE110708: Cytokine Stimulation of ADAR-deleted B16 murine melanoma cells

GSE111904: Osmostress induced changes of chromatin architecture and transcription in mammalian cells [RNA-Seq, HiC]

GSE113162: The miR-200b/200a/429 cluster prevents metastasis and induces dormancy in murine claudin-low mammary tumor cells

GSE118271: RNA-seq analysis of paired kidney-infiltrating and splenic T cells in the MRL/lpr murine model of systemic lupus erythematosus.

GSE110703: Uncoupling of transcription and cytodifferentiation in mouse spermatocytes with impaired meiosis

GSE109844 (mouse): The expression profiles of CD4low(HLA-G+) T cells

GSE112677: EZH2-mediated primary cilium deconstruction drives metastatic melanoma formation

GSE138806: Oncogenic changes and EMT in normal human bile duct epithelial cells are caused by parasite-derived materials and N-nitrosodimethylamine

GSE111039: Maternal Plag1 deficiency delays two-cell stage embryo development and embryonic genome activation [Embryos]

GSE115618: Comparison of global gene expression in homeostatic and regenerating endothelium of the adult mouse aorta

GSE100958: rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline [RNA-seq]

GSE101909: Fgf8 signaling alters the osteogenic cell fate in anterior hard palate

GSE111071: Comparative Transcriptome analysis of hESCs- and iPSCs-derived lentoid body

GSE113179: Dysregulation of p53-RBM25-mediated circAMOTL1L biogenesis contributes to prostate cancer progression (RNA-seq data set)

GSE103400: RNA sequncing of HCN3+ urinary tract pacemaker cells

GSE153368: YB-1 inhibits proliferation of mesothelioma cells through multiple mechanisms

GSE101097: A regulatory circuitry between the Gria2 mRNA and miR-409/miR-495 is altered in mESC-derived motor neurons carrying an ALS-associated FUS mutation

GSE83518: Gene profiling of human adult and pediatric liver cancer cells

GSE110749: Dimethyl itaconate inhibits secondary wave of NF-B signaling in macrophage activation

GSE111102: Transcriptional analysis of PPARgamma activation in control and PPARgamma null macrophages [RNA-seq]

GSE110680: Inhibiting WNT and NOTCH in renal cancer stem cells: implications for human patients

GSE111097: Transcriptome analysis of infected and uninfected mice with Citrobacter rodentium

GSE130975: RNA seq on SP specific CD8+ T cells, Ly49+ and Ly49-CD8+ T cells from MOG and MOG + SP immunized mice [RNA-Seq]

GSE100679: A New Family of Vertebrate Specific Polycomb Proteins Encoded by the LCOR and LCORL Gene Loci Reveal Antagonism Between PRC2 Subtypes

GSE65185: RNAseq changes in pre MAPKi treatment and post MAPKi resistance Melanomas

GSE111163: Large-scale expansion of human iPSC-derived skeletal muscle cells for disease modeling and cell-based therapeutic strategies

GSE102748: Gene expression profiling during active Lyme arthritis development (22 days post infection with B. burgdorferi) in CD45 negative cells isolated from joint tissue of highly genetically similar mouse strains: B6, ISRCL4, and ISRCL3

GSE118928: Transcriptional profiling of healthy, eutopic and ectopic endometrial organoids

GSE110374: Ribotag analysis of proprioceptive dorsal root ganglion neurons in cell culture

GSE114702: Social Interaction-induced Activation of RNA Splicing in the Amygdala of Microbiome-Deficient Mice

GSE111892: Single-cell transcriptomic analysis of tissue resident memory T cells in human lung cancer [ bulk RNA-seq]

GSE110791: Comparison of single hWJSCs and hBMMSCs

GSE102271: Expression analysis of melanocyte stem cells from Mitfmi-vga9/+ mice reveals a role for MITF in the transcriptional regulation of innate immune gene expression

GSE121029: Stabilizing Heterochromatin by DGCR8 Alleviates Senescence and Osteoarthritis (RNA-seq)

GSE111697: Loss of TET2 results in gene expression represssion in mouse GC B-cells and lymphoma cells (RNA-Seq data set)

GSE114668: Intestinal and thymic tuft cell RNA-seq

GSE111779: Quantitative Analysis of Follicular Helper T cell Transcriptomes from Wild Type and Apoe-/-

GSE110748: In utero exposure to diesel exhaust particulates is associated with alterations of the neonatal cardiomyocyte transcriptome, metabolic parturbation and a global decrease in DNA methylation. [RNA-Seq]

GSE118842: Description of transcriptome in non-small cell lung cancer cell lines without KEAP1/NRF2 mutations in response to an electrophilic reagent dimethylmaleate (DEM)

GSE114164: Transcriptome analysis of nascent hematopoietic cells

GSE101239: Next Generation Sequencing Facilitates Quantitative Analysis of Transcriptomes of neural stem/progenitor cells (NS/PCs) in control and prenatal valproic acid (VPA) exposed mice with or without voluntary exercise

GSE101398: Retinal vein occlusion induced by laser treatment in mice

GSE110731: Epigenetic dysregulation of enhancers in neurons is associated with Alzheimers disease pathology and cognitive symptoms (RNA-Seq)

GSE111831: The transcriptomic profile of stem-cell derived neurons in 3D culture conditions and stem-cell derived astrocytic cells

GSE101906: High-fat diet exposure, regardless of the induction of obesity, is associated with altered expression of genes critical for normal ovarian function

GSE109085: Epigenetic evolution and lineage histories of chronic lymphocytic leukemia

GSE111201: IKZF1 as a Master Regulator of Immune Infiltrate Recruitment in Solid Tumors

GSE109163: Derivation and Characterization of a UCP1 Reporter Human ES Cell Line

GSE101340: Transcriptomic profiles of CD4+ T lymphocytes from RhoA wild type (WT) and RhoA G17V mice were generated by deep sequencing in duplicate, using Illumina poly-A RNA seq.

GSE110451: Profiling in vivo Bone Lesion (IVBL) and Orthotopic tumors by Next Generation Sequencing

GSE114637: Transcription differences in DLBCL cell lines U2932, DOHH2 on treatment with TK compound compared to DMSO

GSE111078: Cell non-autonomous regulation of chromosome segregation

GSE112358: The mediator subunit Med23 serves as a gatekeeper of the myeloid-primed state of hematopoietic stem cells (RNA-Seq)

GSE112634: A network of noncoding regulatory RNAs acts in the mammalian brain II

GSE112595: Pyruvate dehydrogenase kinase is a metabolic checkpoint for polarization of macrophages to the M1 phenotype

GSE112043: Allele-specific RNA-seq in Smchd1 control and Smchd1 deleted female neural stem cells.

GSE109190: An RNA-centric dissection of host complexes controlling flavivirus infection [RNA-Seq]

GSE101336: RNA-seq in KPC mice treated with a hypomethylating drug (decitabine) and in untreated KPC mice

GSE108388: Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities [RNA-Seq]

GSE130575: POSH2 Promotes Breast Cancer Stem-Like Properties through JNK Activation and PTX3 Upregulation [HMLER_sublines]

GSE111178: Cytoplasmic NPM1 maintains the leukemic state through HOX expression [RNA-seq]

GSE112732: Genome-wide transcriptional analysis of human patterned induced neurons (hpiNs)

GSE111348: RNA-sequencing of Adult Mouse Inner Hair Cells and Outer Hair Cells of the organ of Corti

GSE112694: RNA-seq analysis of osteogenic differentiating mouse wild type (WT) and Zfp384 (Nmp4) knockout mesenchymal stem/progenitor cells (MSPCs)

GSE138234: Gtf2i and Gtf2ird1 E13.5 whole brain ChIP-seq and RNA-seq

GSE112153: Ldb1 mediates trans enhancement in mammals