Explore curated data sets and assays

Pluto has a large database of published data, available to explore, conduct your own analysis, and view QC reports.

Sequencing-based assays (Page 59)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 59)

GSE104365: Notch1 haploinsufficiency causes aortic aneurysms in mice

GSE97380: Macrophages and osteoclasts stem from a bipotent progenitor that lies downstream of the common macrophage/osteoclast/dendritic cell progenitor

GSE104727: Distinct populations of embryonic epithelial progenitors generate Lgr5+ intestinal stem cells

GSE104171: Transcriptomic analysis of Multiple Myeloma bone marrow microenvironment

GSE94920: Dual angiopoietin-2 and VEGFA inhibition elicits anti-tumor immunity that is enhanced by PD1 checkpoint blockade

GSE105152: Trnascriptome analysis of HeLa cells infected with rTHOV-wt, -dML, -SW mutant or mock-treated

GSE106305: ONECUT2 Drives Neuroendocrine Prostate Cancer Through Hypoxia Signaling

GSE108543: Direct reprogramming of mouse fibroblasts into functional skeletal muscle progenitors

GSE99972: Thiol-linked alkylation for the metabolic sequencing of RNA [Transcriptional output measurement by SLAM-seq in wildtype mES cells]

GSE127475: The mTOR pathway is necessary for survival of mice with short telomeres.

GSE103788: Elimination of liver cancer cells by YAP activated hepatocytes

GSE106159: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and TWIST1 knock out U87 xenograft mice transcriptomes

GSE104670: Bmp2 and Notch pattern the embryonic endocardium

GSE108844: Transcriptional profiles of lung macrophage subsets in Mycobacterium Tuberculosis infection

GSE97859: Oocyte Specific Homeobox 1 (Obox1) Facilitates Somatic Cell Reprogramming by Promoting Mesenchymal-to-Epithelial Transition and Mitigating Cell Hyper-proliferation

GSE108706: Transcriptome analysis in Neobractatin treated cells

GSE103849: UTX guided neural crest function underlies craniofacial features of Kabuki Syndrome

GSE106161: RNAseq data on single dose KMO inhibitor (CHDI-00340246) treated R6/2 mice.

GSE103722: Skeletal muscle ERalpha action is critical for the maintenance of mitochondrial dynamics and metabolic homeostasis in male mice

GSE96839: Peripheral and systemic antigens elicit an expandable pool of resident memory CD8+ T cells in the bone marrow

GSE105414: Genome-wide search for differentially expressed RNAs responsible for the effects induced by Ebola virus replication and transcription

GSE106364: Transcriptomic signature of spinal cord from SOD1 G86R mice

GSE106500: Immune Profiling of Premalignant Lesions in Patients with Lynch Syndrome

GSE103813: RUNX1 and the endothelial origin of blood

GSE104453: Gcn5 regulates FGF signaling outputs through c-Myc during early differentiation of embryoid bodies [RNA-Seq]

GSE129797: Tau-P301S sorted neurons and astrocytes

GSE97077: Xi-reactivation: A mixed modality approach to MECP2 restoration for Rett Syndrome and other X-linked disorders

GSE97139: The role of IFN-I and IL-27 in the expansion of virus-specific CD8+ T cell subtypes during persistent infection

GSE106083: Aryl Hydrocarbon Receptor Preferentially Marks and Promotes Gut Regulatory T Cells

GSE106361: Differential Notch target genes expression profile upon HDAC3 loss-of-function.

GSE96819: Plexin B2 and Semaphorin 4C guide T-cell recruitment and function in the germinal center

GSE109262: Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells

GSE97939: Interferon- drives T reg fragility to promote anti-tumor immunity

GSE106201: Distinct effects of genetic and pharmacological inhibition of galectin-3 on cardiac fibrosis and function in a mouse model of dilated cardiomyopathy

GSE110013: Transcript sequencing of mononuclear fractions from dissociated murine skeletal muscle

GSE99971: Thiol-linked alkylation for the metabolic sequencing of RNA [RNA-seq and Cap-seq of wildtype mES cells]

GSE107919: Chromatin remodeler CHD8 in CNS myelination and remyelination

GSE130012: METTL3 promotes carcinogenesis in colorectal cancer

GSE98436: Activation of LINE-1 after fertilisation regulates global chromatin accessibility

GSE103846: Transcriptome analysis of human embryonic stem cells (hESCs) upon siRNA-mediated knockdown of hESC-essential genes

GSE99674: Transcriptome analysis of whole hippocampus from wild-type and TET1-deficient mice after electroconvulsive shock

GSE107898: Differential RNASeq of human nasal epithelial cells stimulated with RIG-I ligand SLR14

GSE106231: O-GlcNAcylation of human TATA-Box binding protein is required to sustain key metabolic enzyme gene expression

GSE106349: Transcriptome of lung tissue from C57BL/6 mice with or without neutrophil depletion at ZT04 and ZT16

GSE106084: White adipose tissue resident macrophages are required for adipogenesis and energy storage.

GSE106216: mRNA-seq analyses for the differentially expressed genes (DEGs) among Con, NF VM-astrocytes, Ctx-astrocytes, and control Ctx-NPCs

GSE107530: RNA analysis of Sox7- and Sox17-deficient mouse endothelial cells from high grade glioma

GSE103880: RNA-seq expression analysis of mouse liver treated with locked nucleic acids (LNAs) that inhibit mmu-miR-802-5p and mmu-miR-1948-5p

GSE104424: The diphenylpyrazol compound anle138b blocks A channels and rescues disease phenotypes in a mouse model for amyloid pathology.

GSE110229: Targeting CREBBP/EP300 bromodomains in cancer

GSE108789: Transcriptomic profile of the retinal ganglion cell type J-RGC in Tbr1 KO and control mice

GSE111520: mRNA sequence Analysis of Apocynin treated MKN45

GSE106272: Leucegene: AML sequencing (part 6)

GSE110212: Obesity expands a distinct population of adipose-resident T cells and increases vulnerability to infection

GSE142209 (mouse): RNA-seq of human and mouse brain microvessels isolated by laser capture microdissection and matched whole brain samples

GSE104447: The abundantly expressed microRNA locus miR-144/451 regulates only about 100 target mRNAs during erythroid development [RNA-seq]

GSE97805: Polycomb-like proteins link the PRC2 complex to CpG islands

GSE108275: Analysis of gene expression profile in the control and CHD7-knockdown hiPSC-derived lt-NES cells (scRNA-Seq)

GSE112413: Increased FGF8 Signaling Promotes Chondrogenic Rather Than Osteogenic Development in the Embryonic Skull

GSE113368: Medial prefrontal cortex (mPFC) transcriptome analysis of Shank3-overexpressing mice

GSE104882: Diet-Induced Obesity Leads to Infarct Expansion, increased neuroinflammation, and Worsened Outcomes after Stroke

GSE109032: High Throughput sequencing of NLRC4-T337S/T337S and WT mouse duodenal epithelium

GSE112445: Gene expression profile in breast cancer cells

GSE111497: Regulation of neuroregeneration by long noncoding RNAs [RNA-seq]

GSE106298: Context-dependent compensation among phosphatidylserine-recognition receptors

GSE110528: Effect of LXR agonist T0901317 on the intestinal transcriptome in mice.

GSE99974: Thiol-linked alkylation for the metabolic sequencing of RNA [SLAM-seq in wildtype and Mettl3 knockout mES cells]

GSE107893: Identification of Glucocorticoid-Induced Leucine Zipper (Gilz) gene targets in undifferentiated spermatogonia

GSE106550: Next Generation Sequencing Facilitates Quantitative Analysis of pancreatic tissue transcriptomes from Wild Type and miR-21-/- mice treated with caerulein

GSE107925: Genome wide study of microglia in Specific-pathogen-free (SPF) and Germ-free (GF) mice at different stages in males and females (RNA-Seq)

GSE109326: Transcriptional changes after overexpression of proliferation drivers in human mammary epithelial cells.

GSE107555: Transcriptome analysis of SKI knock-out in HL60 cells

GSE107900: RNA-sequence analysis of immortalized, differentiated preadipocytes derived from inguinal subcutaneous white adipose tissue.

GSE104209: Whole blood stabilization for the microfluidic isolation and molecular characterization of circulating tumor cells

GSE97806 (mouse): Disrupted prenatal RNA processing and myogenesis in congenital myotonic dystrophy

GSE107934: Transcriptome response of human skeletal muscle to divergent exercise stimuli

GSE108222: Defining reprogramming checkpoints from single cell analysis of induced pluripotency

GSE104174: Changes in macrophage transcriptome associate with systemic sclerosis and mediate GSDMA contribution to disease risk