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Sequencing-based assays (Page 60)

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Explore curated data sets and assays

Sequencing-based assays (Page 60)

GSE99598: Transcriptome analysis of Bcl11b-deficient CD4+ T-cells during Th2 immune response

GSE155775: Human Keratinocyte Response to Superantigens

GSE107942: Lipoxins Regulate the Egr-1 Network and Reverse Diabetic Kidney Disease

GSE106973: Single cell RNA sequencing of murine basophil/mast cell progenitors and granulocyte/monocyte progenitors

GSE103521: RNA-seq data for lineage negative, Sca1 positive, and cKit positive hematopoietic stem/progenitor cells from H3.3K36M, H3.3K9M, or rtTA control mice

GSE121559: RNA-Seq of human induced pluripotent stem cell-derived cardiomyocytes from a cardiomyopathy patient and familial control

GSE109214: SCNT embryos are defective for H3K27me3 imprinting [RNA-seq]

GSE58993: RNA-seq of 8hr LPS-stimulated bone marrow-derived macrophages from wild type, Ch25h-deficient, and LXRab knockout mice

GSE106188: Antagonistic modulation of NPY/AgRP and POMC neurons in the arcuate nucleus by noradrenaline

GSE104181: CNS-draining lymphatics play a key role in age-dependent cognitive decline and Alzheimers disease pathology [1 of 3]

GSE107958: RNA sequencing of a Spinocerebellar ataxia type 3 (SCA3) mouse model containing the full human ATXN3 gene with a repeat expansion of 75-80 CAGs I

GSE107280: Gene expression profiling by RNA-seq in hTert-HME1 cell line treated with control or BRCA2 siRNAs and grown with or without EGF (epithelial growth factor) II

GSE108243: RNA-seq profiling of mouse embyonic fibroblasts treated with the Myst inhibitor WM-8014

GSE107692: siRNA-mediated silencing of ORAI3 in MDA-MB-468 breast cancer cells exposed to hypoxia

GSE107965: Transcriptome analysis of human embryonic stem cells (hESCs) and human fibroblasts upon rapamycin

GSE104320: PP1-NIPP1 wild type and mutant overexpression in Flip-In T-Rex Hela cells

GSE109633: Effects of Hif1a mutation and maternal diabetes on the offspring heart

GSE109488: Survey of Human Fetal Kidney Development Through Single Cell RNA Sequencing Analysis

GSE98142: Differential impact of Dicer deficiency on microglia of the developing and adult brain (Bulk RNA-Seq)

GSE129316: Generation of induced keratinocyte stem cells from human urine cells by defined transcription factors

GSE106928: A lysosome-plasma membrane-sphingolipid axis linking lysosomal storage to cell growth arrest

GSE98506: Analysis of LPS-stimulated WT and Tnip2[D310N] bone marrow-derived macrophages

GSE102485: Transcriptome Profile and Marker Gene Discovery from Patients with Proliferative Diabetic Retinopathy by RNA-seq

GSE106107: RNA-Seq of CD8+ T cells expressing different levels of Runx3 in a cell culture model of CTL differentiation

GSE109280: Boosting ATM activity alleviates ageing and extends lifespan in a mouse model of progeria.

GSE100460: Gas41 links histone acetylation to H2A.Z deposition and stem cell identity maintenance

GSE106711: Epigenetic regulation by BAF (mSWI/SNF) complexes limits neural stem cell proliferation by suppressing Wnt signaling in late cortical neurogenesis

GSE106663: The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource [scRNA-Seq]

GSE126861: KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity [RNA-seq]

GSE106688: Dynamic reorganization of nuclear architecture during human cardiogenesis [RNA-seq]

GSE105086: The age of the hematopoietic microenvironment specifies lineage in MLL-rearranged leukemia [Ccl5]

GSE107004: Transcriptomic analysis of adult mouse hippocampal tissue in control and MeCP2 knockdown conditions

GSE109630: Health-relevant phenotypes in the offspring of mice given CAR activators prior to pregnancy

GSE98513: Suppression of asthmatic phenotype and altered lipid metabolism in mice lacking zona pellucida binding protein 2

GSE104264: Transcriptome determinants of lung seeding by mammary tumor cells

GSE107277: LncRNA RVRL1 restricts rabies virus infection by disrupting PRC2 complex [RNA-seq]

GSE138001: Cortical RORb is required for layer 4 transcriptional identity and barrel integrity

GSE98496: mRNA-seq data from murine colon adenomas and non-adenoma tissues

GSE106292: Gene expression profiling of human musculoskeletal tissue samples

GSE112483: Celll type specific gene expression from healthy human lung tissue infected with mycobacterium tuberculosis (innate).

GSE106767: Hair follicle stem cells sense niche integrity and recruit immune cells to contain barrier breaches

GSE105944: Dynamic remodeling of mRNA splicing and translation programs drives hepatocyte proliferation during liver regeneration

GSE98755: FBXL19 transcriptionally primes promoters of developmental genes via CDK8-Mediator recruitment [RNA-seq]

GSE98257: R-Spondin chromosome rearrangements drive Wnt-dependent tumor initiation and maintenance in the intestine

GSE113752: CDK6 antagonizes p53-induced responses during tumorigenesis

GSE107288: RNA-seq data of effects of DCPS inhibition in mouse AML cells (CALM/AF10) and in normal GMP cells. Overall mRNA profiles of CALM/AF10 (#1/#2) and MLL/AF9 (#1/#2).

GSE106926: The transcription factor BATF3 regulates the differentiation of TH9 cells and TH9-driven mucosal pathologies

GSE106975: KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA Polymerase II- and III-mediated expression [RNA-Seq, small RNA-Seq]

GSE106716: SYK activity modulates the EGFR-dependent transcriptome

GSE104285: RNA sequencing of WT and ERRAd-/- brown adipose tissue treated with CL316,243

GSE98262: The TNF receptor super family - NF-B axis is critical to maintain effector regulatory T cells in lymphoid and non-lymphoid tissues [RNA-seq]

GSE109648: Hemogenic Endothelium transcriptome along the timeline of hESC differentiation

GSE104232: NFIA enables the rapid derivation of functional, human astrocytes from pluripotent stem cells by modulating G1 cell cycle length

GSE107685: Gene expression changes in human iPSC-derived cardiomyocytes after X-ray irradiation

GSE118184: Comparative analysis of kidney organoid and adult human kidney single cell and single nucleus transcriptomes

GSE149205: REQUIREMENT FOR PKC EPSILON IN KRAS-DRIVEN LUNG TUMORIGENESIS

GSE109999: Single cell profiling of mouse blood cells using CEL-seq2

GSE104295: Analysis of gene expression in SKOV3 ovarian cancer cells after knockdown of the long non-coding RNA DNM3OS

GSE122274: Bacterial sepsis triggers an antiviral response that causes translation shutdown

GSE106803: The role of SIRT1 deacetylase in neuromuscular aging and amyotrophic lateral sclerosis

GSE108348: Transcriptome variations across species, organs and developmental stages

GSE104496: RNA-seq total KO experiments for "Chronic repression by MAF1 supports futile RNA cycling as a mechanism for obesity resistance"

GSE107339: Transcriptome Effects of the knockout of Intraflagellar Transport 88 gene in mice Mitral leaflets

GSE106772: RNA m6A-Ythdf1 in dendritic cells triggers anti-tumor immunity (RNA-seq and RIP-seq in in GMDCs)

GSE105044: RNA-seq of LCMV GP33-specific CD8 TCR transgenic cells (P14) primed at the onset versus in the midst of persistent LCMV-Clone 13 viral infection

GSE110243: Gene-specific mechanisms dictate glucocorticoid receptor-mediated repression of inflammatory response genes in macrophages [RNA-seq]

GSE110867: Identification and validation of GPD1 as an essential cancer stem cell specific target in glioblastoma (RNA-seq: NSC vs BTSC)

GSE107413: Expression levels of genes of LCMV.GP66-77 specific CD4 T cells isolated from bone marrow (BM) and spleen, 3 days after antigenic re-challenge

GSE104507: Type I interferon signaling attenuates regulatory T cell function in viral infection and in the tumor microenvironment

GSE99765: Genomic plasticity in the hippocampus

GSE110278: Induction of human regulatory innate lymphoid cells from group 2 innate lymphoid cells by retinoic acid

GSE119578: RNA sequencing of Asthmatic Human Airway Smooth Muscle Cells I

GSE111573: The absence of H2A.Z does not affect both basal and activated transcription in post-mitotic muscle cells in vivo [RNA-Seq - muscle]

GSE110268 (mouse): Upregulation of FOXD1 by YAP alleviates senescence and osteoarthritis

GSE99068 (mouse): IL-6/Stat3-Dependent Induction of Distinct, Obesity-Associated Natural Killer Cells Deteriorates Energy and Glucose Homeostasis

GSE98491: Phenotypic Correction of Oligodendrocytes by Concurrent Direct Reprogramming and Gene Replacement of Fibroblasts

GSE110882: Bcl11b defines pro-T identity by site-specific cofactor recruitment and by repressing Id2 and Zbtb16 [RNA-seq]

GSE112431: Transcriptomic analysis of control lung alveolar type 2 cells and constitutively active-BMPR1a overexpressing alveolar type 2 cells