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Sequencing-based assays (Page 28)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 28)

GSE54133: Gene Regulatory Circuitry of JNK Signaling Identifies Novel Regulators of Epithelial to Mesenchymal Transition

GSE55716: Integrative Genomic and Transcriptomic Analysis Identified Candidate Genes Implicated in the Pathogenesis of Hepatosplenic T-cell Lymphoma

GSE97033: Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells

GSE96715: Time-dependent regulation of cellular programming of monocytes by NCOR2 [RNASeq_TK]

GSE124723: VD3-VDR axis regulates the homeostasis and function of alveolar macrophage [RNA-Seq LPS]

GSE54461: Temporal gene expression across osteoblastogenesis.

GSE61190: Epigenomic profiling of Non-small-cell Lung Cancer (NSCLC) cells with or without Eed

GSE105436: ICE1 promotes the link between splicing and nonsense-mediated mRNA decay

GSE55502: Unique cell cycle-dependent variations in the pluripotent epigenetic landscape define novel cohorts of temporal expressed bivalent genes during hESCs differentiation

GSE93357: RNA-seq on Tbx5ua Knockdown mice

GSE55195: Ribosome profiling data obtained from HEK293T cells 30 minutes after treatment with arsenite to a final concentration of 40 M

GSE55735: Pri-miRNA identification by generating a Drosha null/conditional-null mouse model.

GSE124682: Polymerase recycling contributes to transcriptional noise

GSE52016: EZH2 controls mammary differentiation independently of its methyltransferase activity through controlling genomic STAT5 access

GSE55113: Expression data from dexamethasone treated mouse embryonic hypothalamic progenitor/stem cells isolated from wild type C57Bl/6 male or female mice

GSE53212: Nanog Independent Reprogramming to iPSCs with Canonical Factors

GSE55370: In vivo proximity labeling and sequencing (IPL-seq) for SNRPN70 in 293T-Rex

GSE58135: Breast Cancer RNA-seq

GSE58498: Expression data of wild type and C-DGCR8 KO cones at different timepoints [RNA-seq]

GSE69667: A systematic analysis of the time series gene expression in TGF-beta induced EMT by Next-generation sequencing

GSE81493: An interaction with Ewing's sarcoma breakpoint protein EWS defines the specific oncogenic mechanism of ETS factors rearranged in prostate cancer

GSE53489: Cfp1 is required for gene expression dependent H3K4me3 and H3K9 acetylation in embryonic stem cells (RNA-Seq)

GSE55782: Core promoter factor TAF9B controls neuronal gene expression

GSE115943: Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming II

GSE60731: Chromatin accessibility profiling of developing cerebellar granule neurons identifies novel neuronal enhancers and reveals a role for Zic transcription factors in neuronal maturation

GSE61102: Temporal RNA-seq expression profiling of Sox17-medaited XEN conversion of ESCs

GSE55744: Comparison of the transcriptional profiles of male E13.5 wild type and L/H-Pgds-/- gonads

GSE56076: Next generation sequencing of small RNAs isolated from exosomes in human semen

GSE87670: Pathogen size alters C-type lectin receptor signaling in dendritic cells to influence CD4 T cell differentiation

GSE123101: TET-catalyzed 5-carboxylcytosine promotes CTCF binding to suboptimal sequences genome-wide

GSE122377: Tuberculous Meningitis in Pediatric Patients [CSF]

GSE87202: MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders

GSE53506: PRC2 coordinates lineage fidelity and DNA methylation during ESC differentiation (RNA-Seq)

GSE125486: Gene Expression Analysis in NIH3T3 cells with control or RPRD1B knockdown

GSE99485: Gene expression data from lineage negative c-kit positive sca-1 positive hematopoietic stem cells (LSK, Lin-Sca-1+c-kit+) isolated from Jak2VF/+ vector and Jak2VF/+ Hmga2 mice

GSE56568: Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency (RNA-Seq)

GSE123255: All-trans retinoic acid cooperates with EVI1 to enhance key properties of acute myeloid leukemia stem cells

GSE65515: Expression and DNA methylation data from the peripheral CD4+T cells of newborn, middle-aged and long-lived individuals detected by high-throughput sequencing

GSE62967: Constraint and divergence of global gene expression in the mammalian embryo

GSE60012: Gender-specific post-natal demethylation and establishment of epigenetic memory

GSE94853: RNA-seq of H9-hESC derived human neural stem cells with combinations of mutant IDH1-R132H overexpression, P53 shRNA knockdown and/or ATRX shRNA knockdown

GSE129806: Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons

GSE60066: Tbx3 controls Dppa3 levels to regulate exit from pluripotency towards mesodermal lineage

GSE60231: RNA-Seq analysis to profile the transcriptome of Bone Marrow Dendritic Cells exposed to different antigen delivery systems

GSE66917: Leucegene: AML sequencing (part 4)

GSE57804: Aorta- and liver-specific ERalpha binding patterns and gene regulation by estrogen

GSE57043: Dicer knockout NSCLC RNAseq and miRseq

GSE59765: EGFR and MEK pathway signature RNA-Seq datasets

GSE60065: Chronic Myeloid Leukemia (CML), induced pluripotent stem cell (iPSC)-derived lin-CD34+CD45+ (iCD34) cell population

GSE52619: Deletion of KDM2B DNA-binding domain affects RING1B and SUZ12 occupancy

GSE57967: LincRNA-p21 Blocks Somatic Cell Reprogramming by Sustaining H3K9me3 and CpG Methylation at Pluripotent Gene Promoters

GSE60833: Dynamics of the human skeletal muscle transcriptome in response to exercise training - part 2

GSE59725: RNA sequencing of monocytes and microglia from mice with experimental autoimmune encephalomyelitis illustrates a changing phenotype with disease course

GSE110868: Identification and validation of GPD1 as an essential cancer stem cell specific target in glioblastoma (RNA-seq: Gpd1 KO)

GSE97047: Wound regeneration deficit in rats correlates with low morphogenetic potential and distinct transcriptome profile of epidermis

GSE95811: Type 2 Innate Lymphoid Cells Treat and Prevent GI Tract GvHD Through Enhanced Accumulation of Myeloid Derived Suppressor Cells

GSE127904: Systematic characterization of epigenetic modifying enzymes identifies KDM3B as a key regulator in castration resistant prostate cancer

GSE55699: Host genomic regions susceptible to damage during H. pylori infection

GSE121093: Vitamin C Promotes Apoptosis in Breat Cnacer Cells by Increasing TRAIL Expression

GSE58733: Sexually dimorphic gene expression emerges with embryonic genome activation and is dynamic throughout development (RNA-seq)

GSE119149: Acquisition of a hybrid E/M state is essential for tumorigenicity of basal breast cancer cells

GSE56796: CORTECON: A Temporal Transcriptome Analysis of In Vitro Human Cerebral Cortex Development From Human Embryonic Stem Cells

GSE60101: Chromatin state dynamics during blood formation (RNA-Seq)

GSE77133: Genome-wide sequencing of hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress

GSE57299: Transcriptome data of CD34+ human cord blood-derived cell treated with UM171, SR1 or both

GSE55009: Paternal poly(ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression

GSE133863: Creld1-deficient CD4+ T cells under homeostatic condition and CD3/CD28 stimulation

GSE62689: RNA-sequencing of unstressed and pressure-overloaded C57 mouse hearts with single or combined ablation of PKCdelta and PKCepsilon

GSE120070: CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression (3' RNA)

GSE56787: DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle

GSE56638: Deep sequencing reveals cell-type specific patterns of single cell transcriptome variation

GSE57147: DNA-damage induced differentiation of leukemic cells as an anti-cancer barrier

GSE128087: Differential gene expression between wild type and Pax9-null pharyngeal arch tissue

GSE52809: Poly(A)-tail profiling reveals an embryonic switch in translational control

GSE61375: Ribosome profiling upon inhibition of eIF4A

GSE116463: Inhibition of Hepatocellular Carcinoma Progression by Forced Metabolic Re-Programming

GSE52464: Epigenetic and transcriptional landscapes of Dnmt3a-deficient olfactory sensory neurons

GSE124724: VD3-VDR axis regulates the homeostasis and function of alveolar macrophage [RNA-Seq]