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Sequencing-based assays (Page 91)

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Explore curated data sets and assays

Sequencing-based assays (Page 91)

GSE132529: Effective treatment of immune checkpoint blockade-resistant tumors by pharmacological activation of estrogen receptor beta

GSE132739: RNA-seq analysis of murine microglial BV2 cells treated with interferon-gamma (IFNg)

GSE134713: Proteinase-Activated Receptor 4 (PAR4) mediates cell membrane blebbing in a Gaq/11, Gai independent, RhoA and -arrestin-dependent manner.

GSE133664: Transcriptional profile of CAOV2 ovarian cancer cells with TAZ silencing

GSE127999: AMPK links acetyl-coA homeostasis to BET recruitment in acute myeloid leukemia: RNA-seq

GSE132539: Dissecting the regulatory strategies of NFkB RelA target genes in the inflammatory response reveals differential transactivation logics [BMDM]

GSE136773: Transcriptional state of T-cells from Atm-proficient and Atm-deficient mice in response to B-cell lymphoma

GSE143261: An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis [RNA-seq]

GSE124102: RNA-seq data from C57BL/6N, cS5Ahi and cS5Alo CD8+ murine T-cells isolated from lymph nodes

GSE138239: Assessment of Viral RNA in Idiopathic Pulmonary Fibrosis Using RNA-seq [poly(A) RNA]

GSE131322: Oligogenic inheritance of congenital heart disease involving a NKX2-5 modifier [human]

GSE138709: Dissecting the transcriptomic landscape of the human intrahepatic cholangiocarcinoma by single cell RNA-sequencing

GSE136173: Epithelial cells in 2D and 3D culture exhibit significant differences in long-range genomic interactions [RNA-Seq]

GSE138697: NSP4 in myeloid progenitors

GSE132475: Loss of ANCO1 repression of AIB1/YAP drives breast cancer progression

GSE143275: poly A+ RNA sequencing of cell cycle-synchronized RNA from U2OS cells

GSE138252: Differential transcriptional responses in human cardiomyocytes

GSE125076: A mouse model of acute post-surgical pain

GSE132511: Transcriptome of ROS-low LSCs isolated from phenotypically primitive and monocytic primary acute myeloid leukemia (AML) cells

GSE138715: Transcriptome analysis of synthetic miR-155 oligo-treated mouse CD4+ T-cells

GSE132410: Indoxyl sulfate stimulates angiogenesis by regulating reactive oxygen species production via CYP1B1

GSE130850: A stem cell-driven lymphoangiogenic switch (scRNA-seq)

GSE133724 (mouse): FMRP facilitates the nuclear export of N6-methyladenosine-containing mRNAs

GSE128197: CD4+ resident memory T cells dominate immunosurveillance and orchestrate local recall responses

GSE133724 (human): FMRP facilitates the nuclear export of N6-methyladenosine-containing mRNAs

GSE132505: The fate switch between ON and OFF SACs is determined by Fezf1

GSE135057: Transcriptional correlates of pathological phenotype in a Huntingtons disease mouse model

GSE132552: Transcriptional changes after spinal cord injury: recruitment of afferents distal to the site of injury

GSE138629: The in vivo endothelial cell translatome is highly heterogeneous across vascular beds (EC-TRAP RNAseq)

GSE132428: Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer [RNA-seq]

GSE98230: RNA-Seq of treatment response of platinum sensitive and platinum resistant ovarian cancer cells

GSE138302: Single cell RNA-seq analysis of feeder-free iPSC-derived gliogenic NS/PCs and neurogenic NS/PCs

GSE123938: Impact of Diet Induced Obesity on Hyperoxic Lung Injury

GSE95516: Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq Human]

GSE132829: Distinguishing smoking related lung disease phenotypes via imaging and molecular features

GSE134986: OMA1, DELE1 and HRI relay mitochondrial stress to the mammalian integrated stress response

GSE136717: An advanced intestinal tissue model reveals host and pathogen strategies during Salmonella infection

GSE132560: Spen regulates X chromosome inactivation (RNAseq in ESCs )

GSE132715: Mouse Homolog of a Human TP53 Germline Mutation Reveals a Lipolytic Activity of p53

GSE124885: A CD4 T cell population expand and reshape autoreactive B cells, contributing to autoimmune lung pathology and post-infection autoimmunity in children

GSE127554: In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation

GSE128337: Niche-Specific Re-Programming of Epigenetic Landscapes Drives Myeloid Cell Diversity in NASH [RNA-seq]

GSE133029: The X-linked trichothiodystrophy-causing gene RNF113A links the spliceosome to cell survival upon DNA damage

GSE133097 (human): Identification of ALPPL2 as a novel specific and functional surface marker for nave pluripotency

GSE133731: RNA sequencing for PDX1, NGN3 and MAFA transduced iPSCs cell

GSE136233: Regulatory interaction between the ZPBP2-ORMDL3/Zpbp2-Ormdl3 region and the circadian clock (RNA-seq at ZT10)

GSE134741: Syndecan-1 promotes lung fibrosis by regulating epithelial reprogramming through extracellular vesicles (RNA-Seq)

GSE132791: Dissecting the regulatory strategies of NFkB RelA target genes in the inflammatory response reveals differential transactivation logics (RNA-seq.WT.p53ko.MEFs_4)

GSE132579: Transcriptome analysis of whole brain tissue from Bahd1+/+ (WT) and Bahd1-/- (KO) mouse embryos (stage E16.5)

GSE133251: The effect of YAP/TAZ on the expression of the heat shock transcriptome

GSE133162: Identification and therapeutic rescue of autophagosome and glutamate receptor defects in C9ORF72 and sporadic ALS neurons

GSE131416: p53 exon 11 mutants generated by CRISPR/Cas9 result in aberrant alternative splicing.

GSE124215: Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues [RNA-Seq]

GSE145912: Aurothioglucose Enhances Pro-Angiogenic Pathway Activation in Lungs from Room Air and Hyperoxia-exposed Newborn Mice

GSE124096: Transcriptome Analysis of Drp1-mediated biological pathways under physiological and ischemia conditions in Drp1-knockdown mice

GSE133054 (mouse): mRNA sequencing of mouse and human heart tissue

GSE125290: Foxp1 drives striatal projection neuron specification and organization via cell-type specific mechanism

GSE124182: Long-chain saturated fatty acids in breast milk are associated with the pathogenesis of atopic dermatitis via inducing inflammatory ILC3s

GSE133100: Prenatal androgen exposure and transgenerational susceptibility to polycystic ovary syndrome

GSE136824: Characterization of extraembryonic endoderm-like cells from mouse embryonic fibroblasts induced using chemical alone

GSE133568: Genome wide transcriptome analysis of palbociclib or GSK3326595 treated A375 cells [Palbociclib_GSK_RNASeq]

GSE126406: Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate [Isl1_E8_75_RNA_seq]

GSE128350: Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta

GSE133328: Cathepsin D deficiency in mammary epithelium transiently stalls murine breast cancer by interference with mTORC1 signaling

GSE133177: Functional dissection of RanBP2 and Nup88/Nup214 subcomplex in nucleocytoplasmic transport

GSE133633: Effects of pre-pubertal DSS treatment on mouse ovary

GSE138677 (human): Sex-specific role for the long non-coding RNA linc00473 in depression

GSE135308: Oligodendrocyte intrinsic miR-27a controls myelination and remyelination

GSE133334: Sleep Deprivation Alters the Pituitary Stress Transcriptome in male and female Mice

GSE133926: RRBS profiling and Transcriptome profiling of Stat3 wild-type, Stat3 knock-out, Dnmt3a/b wild-type and Dnmt3a/b knock-out mouse embryonic stem cells (mES cells)

GSE143170: RNA-seq analysis of human monocyte-derived dendritic cells generated in vitro with M-CSF, IL-4 and TNF-a

GSE134598: Identification of PIKfyve kinase as a target in multiple myeloma

GSE136684: Hepatic transcriptome phenotypes after mTORC1 activation through Tsc1 and Depdc5 mutations

GSE157217: Myosin 7b is a regulatory long noncoding RNA (lncMYH7b) in the human heart

GSE135432: Comparative study of gene expression in lower and upper first molar cap stage tooth germs of DUHi and FVB mice

GSE141116: Epithelial to Mesenchymal Plasticity and Differential Response to Therapies in Pancreatic Ductal Adenocarcinoma

GSE138471: Detection of differences in gene expression in the noradrenergic nuclei in the brain

GSE137068: Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes [RNA-seq/ATAC-seq]