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Sequencing-based assays (Page 76)

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Explore curated data sets and assays

Sequencing-based assays (Page 76)

GSE132127: Gene expression profiles of young and aged mammary epithelial and stromal cell populations from Wild Type and Slug/Snai2-null mice

GSE117728: A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and postnatal growth retardation in mice

GSE120212: Investigsting the role of NF-B p50 S80 phosphorylation in regulating LPS-induced transcription in THP-1 cells

GSE121086: Comparison of DNA methyltransferase-1 (Dnmt1) deleted urogenital sinus epithelium compared to wildtype urogenital sinus epithelium

GSE123970: Role for citron kinase in prostate cancer growth

GSE119675: The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource [RNA-seq II]

GSE123002: RNA-Seq analysis of SRSF3 KO hearts compared to controls and iCLIP analysis of SRSF3 binding profile in neonatal cardiomyocytes

GSE123980: The pause-initiation limit restricts transcription activation in human cells

GSE120310: Effect of neuronal primary cilia on axonal tract development

GSE120229: m6A-seq data analysis of control and PCIF1 knockdown transcriptome

GSE111092: Non-coding regions are the main source of tumor-specific antigens [mouse]

GSE121749: Altered activity-dependent nascent transcription in Rai1-knockdown mature mouse cortical cultures

GSE122967: Structure and degradation of circular RNAs regulate PKR activation in innate immunity

GSE120332: PPARg-K107 SUMOylation regulates insulin sensitivity but not adiposity in mice

GSE120628: Gene expression profile of D2.OR-EGFP and D2.A1-EGFP cells in vitro and in vivo

GSE121084: Human macrophages exhibit high activity to clear intracellular biovar Microtus strain of Y. pestis

GSE119916: RNA-seq of healthy CD34+ HSPCs after co-culture with myelodyplastic syndrome patient-derived mesenchymal stromal cells

GSE110457: Identification of transcriptional network regulated by FGFR1 fusion kinase in stem cell leukemia and lymphoma (SCLL)

GSE139594: Proliferation-correlated expression

GSE109745: Maternal Vitamin C regulates DNA demethylation and development of the mouse embryonic germline [RNA-Seq]

GSE131073: RNAseq analysis of lacrimal glands isolated from wild type and Aire-/- mice at 5 weeks of age

GSE120703: RNA isoform screens reveal the essentiality and tumor suppressor activity of ultraconserved poison exons

GSE123983: Transcriptional Roles for STAT3 in Leptin Action

GSE124677: IL-12 From Endogenous cDC1, and Not Vaccine DC, Is Required for Th1 Induction

GSE131047: CD73 contributes to anti-inflammatory properties of afferent lymphatic endothelial cells in humans and mice

GSE120222: Bulk RNA-seq U2OS cells treated with small molecules

GSE123981: Age-resolved ribosome profiling and RNA-Seq data of mice liver and kidney samples

GSE121759: RNA-seq, ChIP-seq and TERRA CHIRT-seq from p53-/- iPS infected with a lentiviral virus carrying a control scrambled shRNA or shRNA against TRF1

GSE121809: RNA Seq of Fmr1 NPC nuclear fractions

GSE111828: Transcriptional analysis of in vivo responses to acetaminophen induced hepatic injury in the murine liver

GSE119879: Lens epithelial cell transcriptome reprogramming at 48 hours post cataract surgery (PCS) in wild type (WT) and Fibronectin Conditional Knockout (FNcKO) mice

GSE139564: CRISPR/Cas9 mediated intersectional knockout of GSK3b in D2 receptor expressing mPFC neurons reveals contributions to emotional regulation

GSE126309: The lung environment controls alveolar macrophage metabolism and responsiveness during type-2inflammation.

GSE125150: RNA-seq of human iPS derived macrophages with or without KLF1- transcription factor Activation

GSE122930: Single cell sequencing of mouse heart immune infiltrate in pressure overload-driven heart failure reveals extent of immune activation

GSE109829: Actomyosin-mediated tension orchestrates uncoupled respiration in adipose tissues

GSE120667: Acc1 determines memory potential of individual CD4+ T cells by regulating de novo fatty acid biosynthesis [RNA-seq]

GSE119424: Inhibition of histone H3K27 demethylases inactivates brachyury (TBXT) and promotes chordoma cell death [RNA-Seq I]

GSE110422: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and NCoR1 KD CD8a+ Dendritic cells with and without CpG stimulation

GSE122992: Rna-seq transcriptome data for Neurod1-homozygous null and Neurod1-heterozygous null murine E17 pancreatic endocrine cells

GSE122969: Checkpoint blockade immunotherapy induces dynamic changes in PD-1-CD8+ tumor-infiltrating T cells

GSE125853: RNA sequencing and small RNA sequencing in WT and mir-138 DKO CAD cell lines

GSE129757: Whole transcriptome profiles and ribosome profiling of thapsigargin- and tunicamycin-treated LN308 cells

GSE122995: The aldosterone-induced transcriptome of isolated mouse collecting duct cells

GSE121751: Peptidylarginine deiminases 2 and 4 modulate innate and adaptive immune responses in TLR-7 dependent lupus

GSE133798: Functional interrogation of immature -cells reveals their role in insulin release

GSE115055: RNA-seq showed suppressed immune-related profile rescue pregnancy in an abotion mouse model

GSE124453: Genome-wide identification of cancer-specific alternative splicing in circRNA

GSE125903: Non-coding and coding transcriptional profiles are significantly altered in pediatric Retinoblastoma tumors

GSE121766: BCL6 corepressor contributes to Th17 cell formation by inhibiting Th17 fate suppressors

GSE124661: Transcriptional profiling of intestinal changes following KRasG12D mutation in an APC deficient mutation

GSE124513: Reversing Abnormal Neural Development by Inhibiting OLIG2 in Down Syndrome Human iPSC Brain Organoids and Neuronal Mouse Chimeras

GSE113830: Expression regulation by Yaf2 in mouse embryonic stem cells

GSE121866: SIX4 acts as a master regulator of genes associated with the malignant phenotype of non-small cell lung cancer cells

GSE125300: TOP2B disturbed the quality of human oocytes with advanced maternal age

GSE140184: SMG1, a Nonsense-Mediated mRNA Decay (NMD) regulator, as a therapeutic target in multiple myeloma

GSE133757: Induction of Sertoli-like cells from human fibroblasts by NR5A1 and GATA4

GSE121757: Assessing the effect of SUPT4H1 RNAi on the transcription of a repeat-containing reporter construct

GSE123020: Regulation of adenosine-to-inosine (A-to-I) RNA Editome by ADARs-interacting Partner Death Associated Protein 3 (DAP3) in Cancer

GSE124474: Characterization of human ILC2 subsets

GSE130110: CD8+ T Cells Promote Maturation of Liver-Resident NK Cells via the CD70-CD27 axis

GSE109281 (mouse): Subclonal cooperation drives metastasis through modulating local and systemic immune microenvironments

GSE124522: Transcriptome of human coronory endothelial cells in response to nitro-conjugated linoleic acid

GSE124008: A reference map of cardiac transcription factor chromatin occupancy identifies dynamic and conserved transcriptional enhancers

GSE144998: Determining transcriptome changes in whole spinal cord of GarsP278KY/+ adult mice [16NGS-003-burgess]

GSE109863: Hepatic pyruvate kinase muscle isoform 2 (Pkm2) induction in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)-elicited oxidative stress is independent of NRF2 (RNA-Seq)

GSE130080: Gene expression changes in Neil1 / Neil2 / Neil3 triple knockout mouse teratoma

GSE125913: Genome-wide sequencing of male and female TCR1640 immune cells

GSE138412: Epigenetic silencing of CDR1as drives IGF2BP3-mediated melanoma invasion and metastasis [RNA-Seq]

GSE123278: Therapeutic opportunities for diffuse midline glioma identified from high-throughput combination drug screening

GSE123021: Bulk RNA-seq of adult homeostatic microglia from 4 brain regions

GSE124519: lncRNA-PCAT1 knockdown effect on the gene expression of androgen independent LNCaP (LNCaP-AI) cell line

GSE123714: Molecular features of PDGFRa+ mesenchymal progenitors and progeny in the mammary gland

GSE112196: Chd2 is necessary for neural circuit development and long-term memory

GSE123018: Translational control of cardiac fibrosis (I)

GSE139631: Next Generation Sequencing facilitates Quantitative Analysis of mouse CD4+ T cells treated with butyrate

GSE111236: CAR T cell related cytokine release syndrome mouse model

GSE121774: RNA-sequencing analysis of paternal low-protein diet-induced gene expression change in mouse offspring adipocytes