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Sequencing-based assays (Page 6)

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Explore curated data sets and assays

Sequencing-based assays (Page 6)

GSE68358: RNA-seq in two ER+ breast cancer cell lines with and without progestins

GSE123992: Gene expression signatures of SATB2-defficient vs wild-type adult neocortex

GSE70497: Effect of Bmal1 post-natal knockout on liver gene expression: time-series

GSE65808: Combining ChIP-Seq and RNA-Seq data in early placental development to study trophoblast invasion [RNA-Seq]

GSE141663: RNA sequencing from the microglia of mice with acute GvHD against syngeneic bone marrow transplanted and untreated controls

GSE70580: Single cell RNA-sequencing of human tonsil Innate lymphoid cells (ILCs)

GSE149121: Single-Cell RNA-seq immune profile of normal and inflammed mouse skin

GSE99957: T Cell Expression of AhR Inhibits the Maintenance of pTreg Cells in the GI Tract in Acute GvHD

GSE106871: Analysis of the Clustered Protocadherin (cPcdh) Locus in Human and Mouse Pluripotent Stem Cells (RNA-Seq)

GSE71635: Expression profiling of fetal mammary cells

GSE69652: Dichloroacetate (DCA) prevents cisplatin-induced nephrotoxicity without compromising its anti-cancer properties.

GSE68789: Distinct murine mucosal Langerhans cell subsets develop from pre-DCs and monocytes

GSE71299: Disease-associated mutation in SRSF2 misregulates splicing by altering RNA binding affinities

GSE68818: RNA-seq gene expression profiling in resting murine B cells from WT or KMT2D knockout mice, before and after stimulation with LPS, IL4, and anti-CD180

GSE67902: Regulation of protein translation during mitosis

GSE67931: Disruption of Na+/H+ exchanger regulatory factor 2 scaffold suppresses colon cancer proliferation

GSE71028: Molecular distinctions between proprioceptors supplying Tibialis anterior (TA) and Gastrocnemius (GS) muscles [RNA-Seq]

GSE70061: Nuclear HNRNPA2B1 HITS-CLIP and RNA-seq

GSE67945: Investigation about fibroblasts of different origins in culture

GSE79499: LncRNA expression profiling of the early mesoderm reveals LncCPR as a novel regulator of cardiogenesis in mice

GSE68462: RNA sequencing expression analysis of murine Tet-off MLL-AF9;NRAS acute myeloid leukemia cells over-expressing Id2 and upon MLL-AF9 withdrawal

GSE68846: RNA sequencing of ILK-deficient hair follicle bulge stem cells

GSE113524: A Paradigm Shift in Alzheimer's Disease Precipitation, Progression and Potential Prevention

GSE65697: Genome-wide transcriptome profiles in pluripotent mouse Embryonic Stem Cells and during Retinoic Acid-induced differentiation

GSE71434: Allelic reprogramming of the histone modification H3K4me3 in early mammalian development

GSE105486: APT1 regulates the asymmetric partitioning of Notch and Wnt signaling during cell division

GSE69889 (human): Genome-wide Circadian Control of Transcription at Active Enhancers Regulates Insulin Secretion and Diabetes Risk

GSE68083: TAF10 interacts with the GATA1 transcription factor and controls mouse erythropoiesis

GSE75077: Whole genome transcriptomic experiments in mice heart development system

GSE69940: Genome-wide analysis of embryonic gene epression in the absence of Prox1 compared to wild type

GSE65818: Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development

GSE122710: Next generation sequencing of human hepatic stellate cell line, LX-2 treated with recombinant human TGF-1, with DMSO or ML290 (5 M) for 72h.

GSE71446: Genome-wide Analysis of Human Constitutive Androstane Receptor (CAR) Transcriptome in Wild-type and CAR-knockout HepaRG cells

GSE68538: CXCR4 regulates extra-medullary myeloma through epithelial-mesenchymal transition-like transcriptional activation

GSE118859: SOX2 epidermal overexpression promotes cutaneous wound healing via activation of EGFR/MEK/ERK signaling mediated by EGFR ligands

GSE68461: RNA sequencing analysis of murine MLL-AF9 acute myeloid leukemia cells expressing different levels of Id2 and Kit

GSE68108: Genome wide mapping of long noncoding (lnc) RNAs in hepatic stellate cells

GSE70544: Transcriptional Signatures of Hypoxic and Inflammatory Renal Epithelial Injury

GSE67681: HDAC Inhibition Impedes HMGA2-controlled Epithelial-Mesenchymal Plasticity and Suppresses Metastatic, Castration-Resistant Prostate Cancer (RNA-seq)

GSE71364: RNA-seq analysis of the DTA-injured retina

GSE66954: Tracing the formation of hematopoietic stem cells in mouse embryos by single-cell functional and RNA-Seq analyses [10-cell]

GSE70788: RNA sequencing of Control, Cop1, Cop1 and Cop1 ETV1/4/5 islets

GSE125223: Paradoxical CD4 decline on ART: a novel, rare and perplexing immunologic outcome

GSE68178: hnRNP U protein is required for normal pre-mRNA splicing and postnatal heart development and function

GSE69687: Wnt addiction of genetically defined cancers reversed by PORCN inhibition

GSE80591: Messenger RNA expression after MK2206/DMSO treatment of T47D cells

GSE70602: Identifying lincRNA as prognostic biomarker for clear cell renal cell carcinoma

GSE70069: Canonical Wnt signalling regulates nuclear export of Setdb1 during skeletal muscle terminal differentiation [RNA-seq]

GSE70798: Single cell transcriptomic analysis of thymic epithelial cells

GSE118005: SNON and Arkadia (RNF111) regulate TGF-SMAD2/3 dose-dependent responses

GSE86618: Single Cell RNA-Sequencing Identifies Diverse Roles of Epithelial Cells in Idiopathic Pulmonary Fibrosis

GSE85098: Expression data from AEG-1fl/fl and AEG-1DHEP mice which have conditional hepatocyte-specific knockout of AEG-1 (Astrocyte elevated gene 1)

GSE71209: Genes Targeted by the Hedgehog-Signaling Pathway can be Regulated by Estrogen Related Receptor

GSE72156: Global analysis of pre-mRNA subcellular localization upon splicing inhibition by spliceostatin A

GSE66978: Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth

GSE71511: ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq]

GSE71176: Genome-wide analysis of p53 transcriptional programs in B cells upon exposure to genotoxic stress in vivo [RNA-Seq]

GSE71740: Inhibitors of the histone lysine demethylase KDM1A are broadly efficacious in AML by evicting the enzyme from chromatin [RNA-Seq]

GSE71873: Genome-wide analysis of gene expression using in vitro cultured control and Lats1/2 deficient hepatoblasts [RNA-Seq]

GSE70503: Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines

GSE73189: Select correlative genes involved in pathogenesis of idiopathic interstitial pneumonia by high-throughput sequencing analysis

GSE71453: Single cell RNA-seq analysis of sensory neurons reveal diverse injury responses after sciatic nerve transection

GSE67955: The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation

GSE71145: Cellular response to proteasome inhibition by Bortezomib

GSE96764: Metabolic regulation of transcription through compartmentalized NAD+ biosynthesis

GSE70588: ADAR2 affects mRNA coding sequence edits but not gene expression or splicing in vivo

GSE71075: Splicing analyses of 46C mESCs following PTBP depletion

GSE75192: Deep sequencing of mRNA from mouse at five different timepoints in three different tissues (brain, liver, skin)

GSE70833: HCT116 MYC 3' TBE1 (WT) and KO RNA-Seq

GSE66931: Single cell RNA-Seq of Hira-KO and control MII oocytes [Gdf9-Cre+]

GSE71534: Mechanisms of Fibrotic Aortic Valve Stenosis

GSE75147: RNA splicing alteration on glioblastoma and normal neural stem cells

GSE66345: A Circult Mechanism for Differentiating Positive and Negative Associations

GSE71531: Targeting leukemia-initiating cells through pharmacologic inhibition of Pol I transcription to treat MLL-driven acute myeloid leukemia

GSE72111: Genome-wide RNA-seq from GALNT14-depleted and GALNT14 overexpressing MDA-MB-231 LM2 and Par cells

GSE71541: Expression profile of wild type (WT) vs miR-155-/- in FLT3-ITD+ AML (MV4-11) cell lines

GSE72207: RNA-seq of Chd7 wild type and mutant granule neuron progenitors

GSE75168: Histone H3 lysine 4 acetylation-methylation dynamics define breast cancer subtypes [RNA-seq]