PLX254523
GSE71364: RNA-seq analysis of the DTA-injured retina
- Organsim mouse
- Type RNASEQ
- Target gene
- Project ARCHS4
The goal of this study is to identify genes upregulated in the DTA-injured retina.; ; Methods: Retinal mRNA profiles of control (DTAwt) and DTA (DTAmut) mice at day 1 and 5 post-injry were generated by deep-sequencing with Illumina sequencer.; ; Results: RNA-seq tags were mapped to the mouse mm9 reference genome assembly using Tophat2 ver. 2.0.8b, with FPKM values caluculated with Cufflinks ver. 2.1.1 with the default option.Comparison of the genes upregulated in the DTA-injured retina at day 1 and 5 revealed commonly upregulated genes as well as the genes specific to day 1 and 5.; ; Conclusions: Our study provides the detailed analysis of retinal transcriptomes in the DTA-injured retina. SOURCE: Hideto Koso (kouso-tky@umin.ac.jp) - Division of Molecular and Developmental Biology Institute of Medical Science, The University of Tokyo
View on GEOView in PlutoKey Features
Enhance your research with our curated data sets and powerful platform features. Pluto Bio makes it simple to find and use the data you need.
Learn MoreAnalyze and visualize data for this experiment
Use Pluto's intuitive interface to analyze and visualize data for this experiment. Pluto's platform is equipped with an API & SDKs, making it easy to integrate into your internal bioinformatics processes.
Read about post-pipeline analysisView QC data and experiment metadata
View quality control data and experiment metadata for this experiment.
Request import of other GEO data
Request imports from GEO or TCGA directly within Pluto Bio.
Chat with our Scientific Insights team