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Sequencing-based assays (Page 31)

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Explore curated data sets and assays

Sequencing-based assays (Page 31)

GSE84357: RNA-seq of Asxl2 KO LSK cells

GSE66377: Disruptions of Topological Chromatin Domains Causes Pathogenic Rewiring of Gene-Enhancer Interactions [RNA-Seq]

GSE62804: An siRNA screen identifies CHD4 as a target for epigenetic therapy

GSE128928: Spinal cord RNA-seq

GSE67528: Evidence for proliferation and synaptogenesis impairments in neural cells derived from idiopathic autistic patients

GSE63265: Combinatorial targeting of nuclear export and translation of RNA inhibits aggressive B-cell lymphoma

GSE69731: Determination of astrocyte transcripts regulated by neuronal contact

GSE63078: Epigenetic stability in the adult cortex is counterbalanced by the expression of long non-coding RNA

GSE126925 (mouse): The transcription factor IRF4 plays a critical role in plasma cell identity and function

GSE58523: Embryonic stem cell-derived cerebral cortex largely reproduces the in vivo epigenetic control of imprinted gene expression [RNA-seq]

GSE62936: RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples

GSE62889: Genome-wide expression profile of the Tet-On HCT116 inducible cell line that express either the human HNF42 or HNF48 under control of Doxycycline (DOX) [RNAseq]

GSE60238: The RNA-binding protein Sfpq regulates long neuronal genes in transcriptional elongation [RNA-seq, rRNA-depleted]

GSE77624: Expression profiling by high throughput sequencing of tumors derived from human prostate epithelial cells transformed with the oncogenes N-Myc and myrAKT1.

GSE63576: Somatosensory Neuron Types Identified by High-Coverage Single-Cell RNA-Sequencing and Functional Heterogeneity

GSE63555: miR-191 regulates human cell proliferation and directly targets multiple oncogenes

GSE61656: Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq]

GSE78728: Analysis of gene expression changes in early mouse embryos lacking Tgif1 and Tgif2

GSE151949: GDNF drives rapid tubule morphogenesis in novel 3D in vitro model for ADPKD [GDNF RNAseq]

GSE62074: Mutation independent activation of the Notch pathway is associated with Lapatinib resistance in Her2+ breast cancer cell lines

GSE63137: Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

GSE128402: Transcriptomic analysis of intervertebral discs isolated from wild type and Adgrg6-deficient mice

GSE63751: Next Generation Sequencing Facilitates Quantitative Analysis of Bone Marrow Macrophages and Spleenic Macrophages Transcriptomes in mouse T cell acute lymphoblastic leukemia

GSE59571: Striatal genes regulated by super-enhancers and displaying low paused RNAPII are preferentially down-regulated in Huntingtons disease [RNA-seq]

GSE63764: A novel lncRNA GAS1 promotes gastric carcinogenesis and acts as a modular scaffold of WDR5 and KAT2A complexes to specify the histone modification pattern [RNA-seq]

GSE78772: Next Generation Sequencing Facilitates Comparison of Long-Term Cultured Nephron Progenitor Cells with Their Cognate Primary Cells

GSE59073: Identification of epigenetic barrier that prevents reprogramming in somatic cell nuclear transfer

GSE137204: Impact Of Oil Spill To Human Lung Health Next Generation Sequencing And Mouse Model Based Analysis

GSE61999: RNA-sequencing of the GSI treatment of the CUTLL1 cell line

GSE94975: Differential gene expression in IDH1-R132H Low Grade Glioma animal brain tumors brain in response to 10 Gy of radiation

GSE62207: Ileal immune maturation in Pediatric Crohn's Disease

GSE67363: Dnmt1 is essential to maintain progenitors in the perinatal intestinal epithelium.

GSE99737: Platelet Transcriptome Profiling in HIV and ABCC4 as a Biomarker of Platelet Activity

GSE55385: Systematic analysis of the pro and anti-inflammatory activation of mouse myeloid cells

GSE94579: Embryonic stem cells-derived neural progenitor cells

GSE71294: Cell type-specific HITS-CLIP reveals differential RNA processing in motor neurons

GSE63816: Aberrant splicing of U12-type introns is the hallmark of ZRSR2 mutant myelodysplastic syndrome

GSE61969: Gene expression alterations in Dnmt3aKO/FLT3-ITD leukemia

GSE66216: Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal

GSE70657: Single cell global gene profiling reveals molecular and functional platelet bias of aged hematopoietic stem cells

GSE72509: SLE lupus RNA-seq

GSE62129: HuR- dependent regulation of mRNA splicing is essential for the B cell antibody response [RNA-Seq]

GSE69241: Analysis of human, chimpanzee, macaque and mouse tissue transcriptomes using Next Generation Sequencing

GSE62669: Cosplicing network analysis of mammalian brain RNA-Seq data using WGCNA and Mantel correlations

GSE126559: 16p11.2 Reciprocal Genomic Disorder Tissue-Specific Mouse Molecular Signatures

GSE60367: CXCL12/CXCR4 signaling mediates niche occupancy and tumor maintenance in T-cell leukemia

GSE76419: Dino-dependent gene expression signature in MEFs

GSE61996: m6A RNA Methylation is Critical for Adequate Exit from Nave Pluripotency and Execution of Mammalian Development (Ribo-seq)

GSE74966: Genome-wide maps of chromatin changes uppon contextual fear conditioning in mice (RNA-seq)

GSE62659: A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation (RNA-seq)

GSE103790: Analysis of transcriptional regulation by Myt1 and Myt1l

GSE66160: RNA-seq on mouse E11.5 ventral midbrain neurosphere cultures treated with the LXR agonist GW3965 and the GSK3beta inhibitor CT99021

GSE60377: Setdb1 is required for persistence of H3K9me3 and repression of endogenous retroviruses in mouse primordial germ cells

GSE63818: The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells

GSE62854: PER2 synchronizes mitotic expansion and decidual transformation of human endometrial stromal cells

GSE63268: Effects of narciclasine treatment on major metabolic organs of C57BL/6 mice

GSE66117: Transcriptome analysis in chronic lymphocytic leukemia cells using RNA sequencing (RNA-seq)

GSE142417: Interleukin-11 signaling drives vascular smooth muscle phenotypic switching and contributes to aortic remodelling

GSE86110: Roquin suppresses PI3K-mTOR signaling to control T cell differentiation and Treg effector function

GSE60415: The G-protein Alpha Subunit Gs Is A Tumor Suppressor In Sonic Hedgehog-driven Medulloblastoma [RNA-Seq]

GSE66202: Intrinsic age-dependent changes and cell-cell contacts regulate nephron progenitor lifespan

GSE60426 (mouse): mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues (sequencing)

GSE63392: RNA-Seq of cKIT+ sorted cells from 53-137 day old fetal testes and ovaries and RNA-Seq of TRA-1-81+ H1 and UCLA1 hESCs.

GSE63271: A Novel Neuron-specific Histone H4K20 Demethylase LSD1n Promotes Transcriptional Elongation and is Essential for Learning and Memory

GSE63863: Promoter hypermethylation of TERT is associated with hepatocellular carcinoma in the Han Chinese population

GSE151956: RNA-seq analysis of mouse retinas from animals treated with 140mg/kg/day Vigabatrin

GSE64367: Epigenomic profiling reveals the key function of histone H3K9 methylation during tumor transformation process

GSE67478: RNA-seq expression profiling of murine inner-ear hair cells

GSE72536: Gene expression analysis of TIL rich HPV driven head and neck tumours reveals a distinct B-cell signature when compared to HPV independent tumours.

GSE60538: Sox5 and Sox6 direct a cardiac adaptive response to pressure overload

GSE128666: Gene expression analysis of primary mouse prostate organoid culture with overexpression of FOXA1

GSE63348: Expression Analysis of Normal and Neoplastic Mouse Pancreatic Ductal Organoids

GSE63091: Transcriptome-wide modulation of splicing by the exon junction complex

GSE63316: Whole-transcriptome analysis of endothelial-to-hematopoietic stem cell transition

GSE63397: Ets homologous factor regulates pathways controlling response to injury in Calu-3 airway epithelial cells [RNA-seq]

GSE125500: Identifying Tumor Progression by Genome-Wide Characterization of Immature Myeloid Cells In the Peripheral Blood

GSE60556: From mouse to humans: detecting preventing vaccination targets associated to melanoma cancer stem cells. Gene-level analysis: B16

GSE131396: Systematic evaluation of RNA-Seq preparation protocol performance (RNASeq: SMARTer)