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Sequencing-based assays (Page 30)

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Explore curated data sets and assays

Sequencing-based assays (Page 30)

GSE59739: RNA-Seq of single cells from the mouse lumbar dorsal root ganglion

GSE57233: The Prion Protein (PrP) is involved in translation via RNA granule-like mRNPs, a connection which is impaired during neurodegenerative diseases

GSE103341: RNAseq of FACS Drd1 and Drd2 receptor expressing medium spiny neurons (direct and indirect medium spiny neurons) from 5-6 month BACHD Huntington's disease model mice, compared to WT littermates

GSE60530: Profile of gene expression in U87-MG xenografts expressing control vector (V0), the ubiquitin ligase KPC1 or the p50 subunit of the NF-kB transcription factor, using RNASeq analysis of transcripts mapped independently to the human and murine genomes

GSE133796: Slit2 regulates cardiac contractile function and protects hearts against ischemia-reperfusion injury

GSE56066: RNA-seq data from MCF-7 cells (breast cancer model) treated with soy extracts

GSE63810: Next Generation Sequencing Comparison of C57BL/6J and BC027072 -/- Eye Transcriptomes

GSE108503: Pathway analysis of RNA sequencing of various stages of myodifferentiation identifies conditions favoring type I and type II fibers, and highlights increased efficiency of combined differentiation

GSE61351: RNA-seq Analysis of Mineralizing IDG-SW3 Cultures with Mature Osteocyte Characteristics

GSE131589: Helios enhances the preferential differentiation of human fetal CD4+ nave T cells into regulatory T cells [RNA-Seq - induced Treg cells].

GSE57249: Bimodality of gene expression in the blastomeres within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

GSE61024: RNA-Seq in neurons from E16.5 mouse embryonic cortices from WT and SMCX KO mice

GSE133817: Transcriptomic analysis of class I odorant receptor enhancer deletion [eA]

GSE62718 (mouse): FOXP1 orchestration of ASD-relevant signaling pathways.

GSE62149: Epigenetic memory of the first cell fate decision prevents complete ES cell reprogramming into trophoblast [RNA-Seq]

GSE59688: CBP/P300 Function in Repression as well as Activation Regulated by Adenovirus Small E1A [RNA-seq]

GSE57662: Reprogramming of Endothelium Into Hematopoietic Progenitors by Defined Factors and Vascular Induction

GSE156778: Next Generation Sequencing Facilitates Quantitative Analysis of Control and rhCYGB treated liver transcriptomes [DDC]

GSE130160: Patient-derived xenograft models of non-small cell lung cancer for evaluating targeted drug sensitivity and resistance

GSE60890: hnRNPK knock down in Ewing cell line

GSE98415: Single cell sequencing of primary dorsal root ganglia from CAST/Ei or C57BL/6 mouse highlights strain differences in cellular populations.

GSE56276: Imprinted expression is different in visceral yolk sac and cystic embryoid body endoderm

GSE58016: Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [RNA-seq_PcG-KO]

GSE63086: Heterogeneous nuclear ribonucleoprotein C1/C2 links transcriptional and splicing actions of 1,25-dihydroxyvitamin D

GSE60927: Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells

GSE115422: Transcriptome profiling of adult mouse bone marrow endothelial cells

GSE61474: Quantitative profiling of long noncoding RNAs with targeted RNA sequencing.

GSE133090: Transcriptional profiling of Setd5 mutant cortical tissue

GSE58916: RNA Sequencing Quantitative Analysis of cell lines derived from tumours from two mouse models of human osteosarcoma that recapitulate clinically distinct human osteosarcoma subtypes.

GSE57403: Epigenomic comparison of distinct pluripotent stem cell states reveals a new class of enhancers with roles throughout mammalian development (RNA-seq)

GSE63183: Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer

GSE126416: RNA-deep sequencing (RNA-Seq) analysis of dy2J/dy2J (Lama2-CMD mouse model), mdx (DMD mouse model) and Wild-type skeletal muscles

GSE138567: RNA-seq analysis of HBV-infected HepG2-NTCP cells treated by Interferon subtypes

GSE135916: RNA-seq analysis of spleen and liver tissue from wild-type and SXR/PXR knockout mice exposed to PCB-153 or vehicle

GSE126450: Cyclin C Regulated Oxidative Stress Responsive Transcriptome

GSE60853: Transcriptome analysis of two clonally-derived ICC progenitor cell lines [RNA-seq]

GSE61674: In vitro differentiation of human low threshold mechanoreceptive (LTMR) neurons from embryonic stem cells

GSE58107: Characterization of human CDK12 and CDK13 in the regulation of RNA processing

GSE124882: FoxP3 and Ezh2 Regulate Tfr cell Suppressive Function and Transcriptional Program [InVitro Ex-Tfr]

GSE71365: RNA-seq analysis of microglia and infiltrating macrophages in the injured retina

GSE128358: Comparative transcription profiling of mRNA and lncRNA related to C75 effect on pulmonary arterial hypertension

GSE134608: RNA-seq analysis of the effects of single and compound deletion of Moz (Kat6a) and/or Dlx5 during mouse craniofacial development

GSE57910: Genome-wide identification and functional analysis of Apobec-1 mediated C-to-U RNA editing in mouse small intestine and liver

GSE100923: Gadd45a modulates aversive learning through post-transcriptional regulation of memory-related mRNAs

GSE57732: Genomic-scale identification of host genes regulated by EBV during lytic cycle [RNA-Seq]

GSE58524: Allelic imbalance is a prevalent and tissue-specific feature of the mouse transcriptome

GSE89505: Transcriptional profiling of cortex and striatal tissue following chronic dosing of PDE10A inhibitor PF-02545920 in a Q175 homozygous knock-in mouse model of Huntingtons disease

GSE57313: MicroRNAs Shape Circadian Hepatic Gene Expression on a Transcriptome-Wide Scale

GSE108392: The influence of PPFIA1 silencing to gene expression in breast carcinoma cell line and head and neck squamous cell carcinoma cell lines by RNA-sequencing in three dimensional collagen I

GSE57919: Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

GSE135625: RNA-seq Analysis of the gene expression regulated by CID755673 in mouse embryonic stem cells

GSE106542: Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis [bulk RNA-seq]

GSE62450: MED13cTg heart ventricles and epididymal fat

GSE63180: RNAseq of Individual 4T1 Clonal Populations

GSE61875: Astrocyte elevated gene-1 (AEG-1) and c-Myc cooperate to promote hepatocarcinogenesis

GSE61997: m6A RNA Methylation is Critical for Adequate Exit from Nave Pluripotency and Execution of Mammalian Development (RNA-Seq)

GSE99378: Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13

GSE58917: RNA Sequencing Quantitative Analysis and identification of RNA editing sites of Wild Type and ADAR1 editing deficient (ADAR1E861A) murine fetal liver RNA

GSE63189: Identification and functional characterization of long noncoding RNAs in breast cancer

GSE61828: mRNA profiling of hypoxia+SU5416-induced pulmonary hypertension (PH) mouse model treated with an inhibitor of miR-130/301 family

GSE62899: XH lncRNA tend to participate in transcriptional or development regulations as their coding neighbors

GSE62762: Aging-induced type I interferon response at the choroid plexus negatively affects brain function.

GSE63190: High throughput analysis of three human adipose cell lines PAZ6, SGBS and SW872

GSE115449: RNA-seq of HIV bnAb and control individuals PBMC

GSE63782 (mouse): Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition

GSE97352: Global gene expression profile of dasatinib-resistant RCH-ACV cells

GSE63204: Opposing Roles of STAT1 and STAT3 in IL-21 Function in CD4+ T cells

GSE58455: Polyadenylated RNA Sequencing of C57BL/6J Embryonic, Adult and Pressure-Overloaded Hearts

GSE95461: DNA methylation signature defines genes modulated by stromal cell contents of human breast tumors [RNA-seq]

GSE61117: TRIM24 suppresses development of spontaneous hepatic lipid accumulation and hepatocellular carcinoma in mice

GSE61794: PTEN suppresses neoplastic transformation of human neural stem cells by transcriptional repression of Pax7

GSE63194: Histone H3K36M mutation impairs mesenchymal differentiation and drives sarcoma development [RNA-Seq]

GSE61955: Host transcriptome analysis of Aspergillus fumigatus infection in Airway Epithelial Cells

GSE108699: On the design of CRISPR-based single cell molecular screens

GSE113312: PolyA-sequencing in IMR-32 cells treated with THZ531 or DMSO

GSE61994: m6A RNA Methylation is Critical for Adequate Exit from Nave Pluripotency and Execution of Mammalian Development (3p-Seq)

GSE61470: Decoding the Transcriptional Program for Blood Development from Single Cell Gene Expression Measurements

GSE126464: WRN knockout effects upon gene expression in SW48 and OVK18