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Sequencing-based assays (Page 140)

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Explore curated data sets and assays

Sequencing-based assays (Page 140)

GSE131267: A large peptidome dataset improves HLA class I epitope prediction across most of the human population

GSE132758: Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinsons disease.

GSE136447: A developmental landscape of 3D-cultured human pre-gastrulation embryos

GSE131179: Landscape of innate immune system transcriptome and acute T-cell mediated rejection of human kidney allografts

GSE132725: Transcriptome and ribosome profiling of XRN1-null HEK293T human cell line generated by CRISPR/Cas9 gene editing

GSE132143 (human): Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction [RNA-seq]

GSE133014: Distinct SOX signature determines neuroblastoma origin and predicts clinical outcome

GSE134879: Exosomes mediate intercellular transference of non-autonomous tolerance to proteasome inhibitors in mixed-lineage leukemia.

GSE138673: A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons [RNA-seq]

GSE142630: Hiltonol and pRNA stimuli induce an immune activating profile in the transcriptomics of cDC1s

GSE132694: Deciphering molecular mechanisms of MEIS1-mediated prostate tumor suppression through RNAseq and ChIPseq - RNAseq data

GSE133433: Development of a chimeric model to study and manipulate human microglia in vivo (scRNA-seq dataset)

GSE134662: Stress responses, M2 macrophages, and a distinct microbial signature in fatal intestinal acute graft-versus-host disease

GSE138639: Stop Codon Context Influences Genome-Wide Stimulation of Termination Codon Readthrough by Aminoglycosides [Dataset 2]

GSE133629: Targets mediated microRNA arm-imbalance promotes gastric cancer progression [lncRNA]

GSE133677: LncRNA NONHSAT113026 represses renal cell carcinoma tumorigenesis through interacting with NF-B/p50 and SLUG

GSE136751: Phenotypic mapping of pathological crosstalk between glioblastoma and innate immune cells by synthetic genetic tracing

GSE131387: Editing the Sickle Cell Disease Mutation in Primary Human Hematopoietic Stem Cells: Comparison of Endonucleases and Homologous Donor Templates

GSE135069: Antiviral potential of human IFN- subtypes against influenza H3N2 infection in human lung explants

GSE131375: A kinase inhibitor screen identifies a dual cdc7/CDK9 inhibitor to sensitise triple-negative breast cancer to EGFR-targeted therapy

GSE138688: Derivation of trophoblast stem cells from nave human pluripotent stem cells [RNA-seq]

GSE157080: Transcriptome profiling of normal and DNMT3L-overexpressing human neurons [RNA-seq]

GSE131503: Small extracellular vesicles are key regulators of non-cell autonomous intercellular communication in senescence via the interferon protein, IFITM3

GSE133183: H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

GSE132606: Antiviral innate immunity of hepatitis C virus-infected stem cell-derived hepatocytes

GSE133286: Transcriptional profiling of LS1034 cells treated with tepoxalin

GSE134916: Next Generation Sequencing unveils the difference between human TR3-56 cells from healthy and T1D subjects

GSE135140: U1 snRNP complex with cleavage and polyadenylation factors controls mRNA transcription termination

GSE131409: Transcriptome of subsets of human haematopoietic stem cells from non-mobilised peripheral blood of healthy frequent platelet donors

GSE143152: A pan-cancer transcriptome analysis to identify the molecular mechanism of prexasertib resistance_RNASeq

GSE133078: Alu RNA modulates the expression of cell cycle genes in human fibroblasts

GSE139382: scRNA-seq reveals development of a broad spectrum of cell types in human iPSC derived hepatic organoids (HOs) and defines biomarkers in iPSC to liver lineage differentiation stages

GSE133308: Inhibition of histone H3K27 demethylases inactivates brachyury (TBXT) and promotes chordoma cell death [RNA-Seq III]

GSE131475: Circular RNA expression alteration in peripheral blood of premature infants with periventricular white matter damage

GSE131504: Characterization of Human Pegivirus Infection in Liver Transplantation Recipients

GSE137083: PML2-mediated thread-like nuclear bodies mark deep senescence in HGPS cells [RNA-seq]

GSE131552: Identification of monocyte-like precursors of granulocytes as a mechanism for accumulation of PMN-MDSC in cancer

GSE131571: Integrated analysis of H2A.Z isoforms reveals a complex interplay in gene regulation [U2OS_siZ1-siZ2 RNA-seq]

GSE132931: Transcriptional signature of MAITs in LTBI (CD8+ or CD8-)

GSE132932: Transcriptional signature of MAITs in LTBI (memory CD8 T cells and subsets of TRAV1-2+CD161+ MAITs)

GSE136803: ABCB5 is activated by MITF and b-catenin and is associated with melanoma differentiation

GSE134898: A cancer-specific ubiquitin ligase drives alternative polyadenylation by targeting PCF11

GSE136666: Transcriptomic profiling of substantia nigra and putamen in Parkinsons disease

GSE135707: PSEN1E9, APPswe and APOE4 confer disparate phenotypes in human iPSC-derived microglia

GSE136310: CT Irradiation Induced Changes of Gene Expression within Peripheral Blood Cells

GSE134122: Transcriptional responses of human insulinoma cells to acute cytokine exposure

GSE143233: RNA m6A methylation regulates sorafenib-resistance in liver cancer through FOXO3-mediated autophagy [RNA-seq]

GSE136243: Presymptomatic Increase of an Extracellular RNA in Blood Plasma Associates with the Development of Alzheimers Disease

GSE133022: Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcription control (RNA-Seq)

GSE134141: The analysis of copy number alterations from a lncRNA perspective reveals a regulator of lung cancer immune evasion

GSE136326: In vivo atlas of RNA secondary structures recognized by ADARs [RNA-Seq]

GSE133086: Dual RNA-Seq characterization of host and pathogen gene expression in liver cells infected with Crimean-Congo Hemorrhagic Fever Virus

GSE135713: Postnatal lipids drive hepatocyte maturation

GSE135328: Loss of the nuclear Wnt pathway effector TCF7L2 promotes migration and invasion of human colorectal cancer cells

GSE136908: RNA Seq of HMVEC under hypoxia

GSE133144: Translocation of dense granule effectors across the parasitophorous vacuole membrane in Toxoplasma-infected cells requires the activity of ROP17, a rhoptry protein kinase

GSE136763: Endogenous retroviruses are a source of oncogenic enhancers in acute myeloid leukemia [RNA-Seq]

GSE136795: Self-renewing Endometrial Epithelial Organoids of the Human Uterus [bulk RNA-seq data]

GSE134459: Genome-wide maps of transcriptomic and epigenomic state in melanoma cell lines

GSE134164: The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq2]

GSE133264: Loss of ER and nuclear envelope-associated neutral sphingomyelinase SMPD4 causes a severe neurodevelopmental disorder with microcephaly and congenital arthrogryposis

GSE136314: Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

GSE133285: Transcriptional profiling of SF295 cells following MTF1 knockout by CRISPR/Cas9

GSE136366: Gene expression analysis of the impact of TDP-43 knockout in human cells.

GSE136609: Transcriptome analysis to UHRF1 depletion in MUTU I cells

GSE141126: Transcriptome analysis-identified long noncoding RNA CRNDE in maintaining endothelial cell proliferation, migration, and tube formation

GSE134232: Investigation of transcriptional response upon loss of RanBP3

GSE133479: Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development

GSE133509: Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development

GSE143190: Selective retrieval of individual cells from microfluidic arrays combining dielectrophoretic force and directed hydrodynamic flow

GSE136421: MKRN2 physically interacts with GLE1 to regulate mRNA export and zebrafish retinal development (RNA-Seq)

GSE134809: Single-cell analysis of Crohns disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy

GSE133630: TGF-beta couples pluripotency and epithelial character via ZNF398

GSE135635: RNA-sequencing in plasmacytoid dendritic cells from patients with primary Sjogren's syndrome (pSS), non-Sjogren's sicca (nSS), and healthy donors (HC)

GSE133432: Development of a chimeric model to study and manipulate human microglia in vivo (bulk RNA-seq dataset)

GSE134960: YBEY is an essential biogenesis factor for mitochondrial ribosomes

GSE135223: Human macrophage responses to viral-like particles from non-IBD or IBD colonic resections

GSE136414: Prolyl Hydroxylase Substrate Adenylosuccinate Lyase Is An Oncogenic Driver In Triple Negative Breast Cancer