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Sequencing-based assays (Page 11)

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Explore curated data sets and assays

Sequencing-based assays (Page 11)

GSE86927: Impact of NCoR1 on global transcriptomic profiling in intestinal epithelial cells during development

GSE84942: Global Deletion of TSPO Does Not Affect the Viability and Gene Expression Profile.

GSE85423: RNA sequencing of mice fed a high fat/high sucrose diet or a low fat/low sucrose diet

GSE84186: Single-nucleotide-resolution mapping of HBV promoters using CAGE

GSE89272: Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions (RNA-Seq)

GSE84953: Cnot3-dependent mRNA deadenylation safeguards the pluripotent state

GSE83541: Zinc finger protein overexpression improves glucose homeostasis in mice

GSE97658: Quantitative Analysis of JAK2V617F/+ Plek2+/+ and JAK2V617F/+ Plek2-/- erythroblast and hematopoietic stem cells/ progenitor cells Transcriptomes

GSE89044: Understanding the reproducibility and robustness of the kidney organoid differentiation protocol using RNA-seq

GSE89030: Analysis of gene expression profiles from alloreactive TCR-Tg CD8 T cells during activation and induction of tolerance

GSE136232: Regulatory interaction between the ZPBP2-ORMDL3/Zpbp2-Ormdl3 region and the circadian clock (RNA-seq at ZT7)

GSE83145: RNA profiling of testis from wild-type and tamoxifen-induced NIPP1 knockout mice

GSE90659: Genetic analysis of Ikaros target genes and tumor suppressor function in BCR-ABL1+ pre-B ALL [RNA-seq]

GSE77647: RNA-binding proteins Cugbp1 and HuD regulate neocortical projection neuron identities under the translational control of Neurotrophin-3

GSE93263: Incomplete MyoD-induced transdifferentiation is mediated by chromatin remodeling deficiencies [RNA-Seq]

GSE81670: Comparison of Kras;Rank+/+ and Kras;Rankfl/fl mouse primary pneumocytes treated with Rankl ex vivo

GSE114011: E-cadherin suppresses invasion and promotes metastasis in multiple breast cancer models

GSE84988: Expression of MLL-ENL in hematopoietic stem cells induces mixed lineage acute leukemia

GSE114018: HNF4 Pathway Mapping Identifies Wild-type IDH1 as a Targetable Metabolic Node in Gastric Cancer

GSE84994: RNA-seq analysis of livers of mice fed a high fat diet with and without administration of an inhibitor of the ileal bile acid uptake transporter ASBT

GSE149870: A paired gRNA/Cas9 exon excision screen reveals the essentiality of ultraconserved poison exons

GSE77778: Protracted NP95 binding to hemimethylated DNA disrupts SETDB1-mediated proviral silencing [RNA-seq]

GSE78691: Combination targeted therapy to disrupt aberrant oncogenic signaling and reverse epigenetic dysfunction in IDH2- and TET2-mutant acute myeloid leukemia (RNA-Seq)

GSE94436: Gene profiles in inguinal white adipose tissue in Hsp20 knockout mice

GSE84705: Stochastic capture of chromatin topological domains by nuclear matrix RNA polymerase II determines monogenic choice

GSE90697: Organism-level analysis of vaccination reveals networks of protection across tissues

GSE109231: RNA-Seq in human T-cell lymphoblastic lymphoma samples and control thymuses

GSE90711: Proteomics and transcriptomics of peripheral nerve tissue and cells unravel new aspects of the human Schwann cell repair phenotype

GSE85731: Epigenetic memory of obesity in mouse colonic epithelium

GSE86976: Protein Kinase CK2 Controls the Fate Between Th17 Cell and Regulatory T Cell Differentiation

GSE95078: Transcriptional responses to TNF-alpha in germline A20 haploinsufficiency

GSE94430: Capturing the onset of PRC2-mediated repressive domain formation (RNA-Seq)

GSE86956: Genes regulated by SPDEF or FOXA3 in A549 lung carcinoma cells [RNA-seq]

GSE80036: Targeted deletion of an Nr4a1 associated enhancer ablates Ly6Clow monocytes while protecting pleiotropic gene function in macrophages [RNA-seq]

GSE84661: Dynamic and stable enhancer-promoter contacts regulate terminal differentiation [RNA-Seq]

GSE85671: The Genomic Landscape of Atypical Fibroxanthoma

GSE84292: Identification of transcriptomic drivers of squamous cell carcinoma development through a preneoplastic intermediate [mouse RNA-Seq]

GSE86653: Time course of the miR-203 effect during reprogramming from somatic cells to pluripotent cells

GSE89725: The mRNA expression analysis of psoriasis skin lesion mesenchymal stem cell

GSE97764: The microprotein Minion controls cell fusion and muscle formation

GSE99180: CD133hi, Notchhi, DP (double positive) and DN (double negative) in GBML8 and GBML20, both patient-derived glioblastoma tumorsphere cultures

GSE90758: RNA-SEQ of mutants B cell for IgH 3'RR and Emu

GSE85648: Genomic binding of PAX8-PPARG fusion protein regulates cancer-related pathways and alters the immune landscape of thyroid cancer [seq]

GSE112251: Tumor immune evasion arises through loss of TNF sensitivity [Ado]

GSE78964: Foxa2 identifies a novel ventricular-specific cardiac progenitor population during gastrulation.

GSE99296: -ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming

GSE87050: RNA-Sequencing analysis of BET inhibitor resistant cell lines

GSE79951: Topoisomerase 1 Regulates Gene Expression in Neurons through Cleavage Complex-Dependent and -Independent Mechanisms

GSE87186: Safety and Immunogenicity of the Recombinant BCG Vaccine AERAS-422 in Healthy BCG-nave Adults: A Randomized, Active-controlled, First-in-human Phase 1 Trial

GSE86007: iPSC-Derived Cholangiocytes

GSE85737: RNA-Seq Analysis of Gfi1b KO Hematopoietic Stem Cells

GSE94402: The gut microbiome drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development

GSE98082: RNA-sequencing from wild-type (WT) or Tie2-Ino80 knockout (KO) mouse embryo hearts

GSE109074: Gene expression in adult sciatic nerves upon miRNA ablation and crush injury

GSE87068: RNA Sequencing Quantitative Analysis of RNA editing sites of Wild Type and ADAR1 editing deficient (ADAR1E861A) murine fetal RNA of various tissues

GSE87615: ASCL1 mediates neuronal differentiation of primary GBM stem cell cultures upon Notch signalling blockade [RNA-seq]

GSE89736: Cdk8 overexpression effect in heart

GSE144622: Sex Diversity in Proximal Tubule and Endothelial Gene Expression in Mice with Ischemic Acute Kidney Injury

GSE79238: Transcriptional Basis of Neuronal Diversity in the Mammalian Brain

GSE89742: Hippo Pathway Regulates Microarchitecture of Fibroblastic Reticular Cells in Lymph Node

GSE85880: Genome-wide transcriptomicprofiling of cardiomyocyte differentiation from human ES cells and iPS cells under exposure to sublethal of isotretinoin (RNA-seq)

GSE80708: An ES cellspecific NuRD complex functions through interaction with Wdr5

GSE100217: Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder

GSE86083: Polycomb-mediated axial patterning requires nucleosome compaction [RNA-seq]

GSE85532: RNASeq comparing Thpok and LRF-deficient Tregs to Control

GSE87456: Hypoxic transcriptome of SQ20B human head and neck cancer cells

GSE85870: Global loss of epigenetic and transcriptional fidility defines a subclass of cancer with immunotherapy resistance

GSE129948: Bulk RNA-sequencing of spinocerebellar tract neuron populations in cervical and thoracic sections of mouse spinal cord

GSE87504: Expression analysis of wt and maternal Trim28 mutant E3.5 embryos

GSE85534 (mouse): Single Cell Transcriptome Conservation in Cryopreserved Cells and Tissues

GSE60873: Transcriptome of EBV-infected gastric cancer cell lines

GSE87088: The expression changes of RNA binding proteins during human myeloid differentiation

GSE86199: Gene expression profiles of Hes1 positive retinal subsets

GSE83251: RNA-seq analysis of retinoic acid treated mouse neuromesodermal progenitors

GSE85535: Catch-and-release of cytokines converts transient exposure into long-term inflammatory responses

GSE84857: The Role of Epithelium EZH2 in Experimental Colitis

GSE149359: Next generation sequencing facilities quantitative analysis of ASAP2 knockout or wild-type Panc1 and MiaPaCa2 cells

GSE86794: Time course of the miR-203 effect on the transcriptomic profile of IPSCs