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Sequencing-based assays (Page 82)

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Explore curated data sets and assays

Sequencing-based assays (Page 82)

GSE120001: Effect of Miz1 POZ domain deletion on expression profiles of B and T leukemia cells

GSE126401: Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate [Isl1_RNA_seq]

GSE133819: Transcriptomic analysis of class I odorant receptor enhancer deletion [eC]

GSE115437: HDAC1 modulates OGG1-initiated oxidative DNA damage repair, brain aging, and Alzheimers disease pathology

GSE74896: The conserved transcriptional landscapes in human spermatogenesis

GSE124304: Fubp1 knockdown in BCR-ABL1 induced chronic myeloid leukemia (CML) like myeloproliferative neoplasm mouse model

GSE124359: 8-OxoG in GC-rich Sp1 binding sites enhances gene transcription during adipose tissue development in juvenile mice [RNA-Seq]

GSE124763: Myopalladin promotes muscle growth through modulation of the serum response factor pathway

GSE115258: Six3 and Six6 are jointly required for the maintenance of multipotent retinal progenitors through both positive and negative regulation

GSE115447: RNAseq data of brain cortex from mice at d10 post-microglia depletion and non-depleted controls

GSE114261: BET Inhibition Improves NASH and Liver Fibrosis

GSE124302: LncRNA Spehd regulates hematopoietic stem cells and progenitors and is required for multilineage differentiation

GSE124316: Next generation sequencing analysis of transcriptomes at different timepoints after chlorprothixene treatment in NB4 and Kasumi-1 cells

GSE133971: RNA sequencing analysis of mouse follicular B cells, memory B cells, plasmablasts and plasma cells

GSE134439: Mapping Gata2 enhancer-dependent developmental trajectories by single-cell RNA-sequencing

GSE109658: Single-Cell RNA Sequencing Reveals Metallothionein Heterogeneity during hESC Differentiation to Definitive Endoderm [RNA-Seq]

GSE136158: CSF1R inhibitor-mediated microglial depletion prevents reductions in striatal volume, extracellular matrix alterations, and perineuronal net loss in a mouse model of Huntingtons disease

GSE121314: Lineage-specific reorganization of nuclear peripheral heterochromatin and H3K9me2 domains

GSE125108: RNA-Seq transcriptome analysis of whole newborn lenses from FVB/N, Le-Cre and P0-3.9GFPCre mice

GSE114634: Cooperative Regulation of Normal and Neoplastic Hepatocyte Proliferation by Myc and ChREBP

GSE117096: PRMT1-dependent histone arginine methylation regulates mature beta cell identity (RNA-Seq)

GSE126789: Reactivation of PTEN tumor suppressor for cancer treatment through inhibition of a MYC-WWP1 inhibitory pathway

GSE114673: Gene expression profiling in Dis3l2-null and wild-type nephron progenitor cells

GSE128361: Hepatic transcriptomics reveals that lipogenesis is a key signaling pathway in isocitrate dehydrogenase 2 deficient mice

GSE125144: Identification of key molecules involved in tertiary lymphoid organ formation in the central nervous system

GSE117167: Tissue-specific transcriptomic and epigenomic profiles explain differential damage and repair of anti-cancer drug cisplatin induced DNA-adducts across mouse organs

GSE126681: Pleiotrophic roles of VEGF during neonatal thymic development

GSE126962: Circadian transcriptome in mouse skeletal muscle after exercise in the early rest versus active phase

GSE133018: KAT3-dependent acetylation of cell type-specific genes maintains neuronal identity in the adult mouse brain

GSE133725: Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification [Gastrulation2_scRNAseq_embryo_SJC]

GSE114674: Therapeutic effects of ASO-mediated reduction of Atxn1 in a SCA1 Mouse Mode: Proof of concept with distinct disease-associated transcriptome profiles in cerebellum and medulla

GSE115714: The RNA exosome contributes to gene expression regulation during stem cell differentiation [RNA-Seq]

GSE132173: RNA-seq of tissues from MC903- and Ethanol-treated mice

GSE126766: Transcriptome profiling in primary human skeletal myotubes with MondoA knockdown

GSE128198: The 11q13.5 immune disease risk locus contains a distal enhancer required for Treg-mediated suppression of gut inflammation [RNA-Seq]

GSE115490: Transcriptome-wide analysis of HuD (ELAVL4) RNA interactome and post-transcriptional regulation in a motor neuron cell line

GSE143144: Discovery of small molecules that normalize the transcriptome and enhance cysteine cathepsin activity in progranulin-deficient microglia

GSE124883: FoxP3 and Ezh2 Regulate Tfr cell Suppressive Function and Transcriptional Program [tissue]

GSE136004: circSamd4 represses myogenic transcriptional activity of PUR proteins

GSE122313: Ikaros prevents autoimmunity by promoting anergy induction and restraining Toll-like receptor signaling in B cells

GSE114797: Histone acetyltransferase Kat2a stabilises pluripotency with control of transcriptional heterogeneity

GSE132177: A systematic dissection of whole transcriptome profiling in the APP/PS1 mouse brain

GSE128382: Identification and characterization of artery and vein enhancers in the human genome

GSE124279: The RNA-binding protein HuR is a negative regulator in adipogenesis [Ribo-seq_RNA-seq_matched]

GSE126551: Lats1/2 suppress NFkB and aberrant EMT initiation to permit pancreas progenitor differentiation

GSE128958: TGF- and RREB1 coordinate EMT programs in NMuMG cells

GSE114827: Endogenous glucocorticoids control host resistance to viral infection through the tissue-specific regulation of PD1 expression on NK cells

GSE122393: The epigenetic regulator Histone Deacetylase 3 regulates the ontogeny and maintenance of tissue-resident macrophage [RNA-Seq]

GSE125099: Effector differentiation potential determined at the level of human CD8+ nave T cell subsets [RNA-Seq]

GSE124140 (mouse): Antagonism of IAPs enhances CAR T cell efficacy

GSE125147: Condensin II is recruited to promoters by pRb and regulates expression of divergently paired genes [RNA-seq]

GSE114690: Next Generation Sequencing Facilitates Quantitative Analysis of the control 3T3-L1 (3T3-L1-NC) and LIGHT (tnfsf14) overexpression 3T3-L1 cells (3T3-L1-LIGHT) before and after differentiation into beige adipocytes

GSE128196: Transcriptional characterization of LV of Nppb KO

GSE118703: Gene expression changes in liver upon LCMV Cl13 infection

GSE126988: RNA-seq analysis of gene regulations by the combination treatment of crizotinib plus cisplatin in established MCA205 tumors

GSE121340: A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism: Liver RNA profiles of obese and lean mice.

GSE114933: Mettl3-mediated m6A RNA methylation regulates the fate of bone marrow mesenchymal stem cells and osteoporosis

GSE127081: Blocking expression of inhibitory receptor NKG2A overcomes tumor resistance to NK cells

GSE115510: Angioimmunoblastic T-cell lymphoma-like lymphadenopathy in mice transgenic for human RHOA with p.Gly17Val mutation

GSE114967: Mammalian Nucleolar Protein DCAF13 Confers Developmental Competence on Growing Oocytes

GSE122726: REV-ERBa regulates TH17 cell development and autoimmunity

GSE115950: Neonatally imprinted mesenteric lymph node stromal cell subsets induce tolerogenic dendritic cells [migDC]

GSE121603: Prenatal Bisphenol A Exposure in Mice Induces Multi-tissue Multi-omics Disruptions Linking to Cardiometabolic Disorders (RNA-Seq)

GSE128050: Niche Derived Netrin-1 Regulates Hematopoietic Stem Cell Dormancy via its Receptor Neogenin-1

GSE115746: Shared and distinct transcriptomic cell types across neocortical areas

GSE123829: Autologous microgratf accelerates endogenous wound healing response through ERK-induced cell migration.

GSE119942: Single-Cell Transcriptomics Identifies TOX as a Key Transcriptional Regulator of Progenitor-Like CD8 T Cells in Chronic Infection [RNA-seq]

GSE129020: RNA sequencing of wildtype and PHOSPHO1 knockout brown fat

GSE129707: Dinucleotide regulation by REXO2 maintains promoter specificity in mammalian mitochondria

GSE128363: Modular architecture of the STING C-terminal tail allows interferon and NF-B signaling adaptation

GSE128034: Transcriptional characterization of the myocardial infarct border zone

GSE128808: Mitofusin 2 is essential for oocyte and follicle development, and to maintain ovarian follicular reserve during reproductive aging [SFO]

GSE122774: Runx1 and Runx3 cooperatively repress Pmp22 to drive neurofibromagenesis [RNA-seq]

GSE126226: N6-methyladenine in DNA antagonizes SATB1 in early development [RNA-seq]

GSE149156: Transcriptome and Retrotranscriptome profiling in HIV infected women with Breast Cancer (RNA-seq)

GSE117967: Loss of PRC1 activity in different stem cell compartments activates a common transcriptional program with cell-type dependent outcome

GSE126490: Uncovering the hepatic gene expression variations and sex-differences as response to high-fat diet consumption in the highly genetically diversity of the Collaborative Cross mouse model

GSE128909: NK cell-derived GM-CSF potentiates autoantibody-induced inflammatory arthritis and is negatively regulated by CIS