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Sequencing-based assays (Page 79)

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Explore curated data sets and assays

Sequencing-based assays (Page 79)

GSE123423: Muscle stem cells give rise to rhabdomyosarcomas in severe model of Duchenne muscular dystrophy

GSE121176: Quantitative Analysis of Wild Type CBL, CBL 70Z and Y371S 3T3 Stable Cell Transcriptomes

GSE130113: Single-Cell RNA Sequencing Reveals Regional Reprogramming during Adaptation to Massive Small Bowel Resection in Mice

GSE112033: Parabiosis and single-cell RNA-Sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis

GSE125667: Two distinct interstitial macrophage populations coexist across tissues in unique subtissular niches [FACs sorted]

GSE123805 (human): Transcriptome of activated human and mouse MAIT cells

GSE142400: Electronic cigarette exposure disrupts blood-brain barrier integrity, promotes neuroinflammation, and leads to cognitive dysfunction

GSE116482: Imprecise DNMT1 activity coupled with neighbor-guided correction enables robust yet flexible epigenetic inheritance

GSE125318: Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency

GSE117798: Circular DNA tumor viruses make circular RNAs

GSE129808: Synaptic dysfunction in human neurons with Autism associated deletions in PTCHD1-AS

GSE123468: RNA-seq of FSHD and control immortalised myoblasts II

GSE124024: Serum Reponse of CF1 primary MEFs , E13

GSE126084: High-throughput sequencing Analysis of mouse BMDM cell Transcriptomes

GSE125382: Gene expression profiling of human colon cancer cell lines implanted in colon and liver of mice

GSE113329: Role of TAF5L and TAF6L in controlling the mouse ESC state [RNA-seq]

GSE112922: Gene expression analyses of GI eosinophils and macrophages from naive colons and intra-tumor

GSE123835: Zika virus antagonizes interferon response in patients and disrupts RIG-I-MAVS interaction through its CARD-TM domains

GSE130126: Transcriptome analysis of Riociguat and Vehicle control treatment in human hematopoietic stem and progenitor cells

GSE123316: Study of the role of IL-12p40-related cytokines in colitis of NEMOIEC-KO mice

GSE112393: A comprehensive roadmap of spermatogenesis and testis niche from single-cell RNA-seq

GSE125280: Identify novel TGF--regulated genes by RNA-sequencing from MCF10A cells

GSE122305: Dissociating fibrosis from inflammation in systemic sclerosis the case of interleukin-17A

GSE112038: A model that cancer cells metastatic competence is determined by their states

GSE73470: Identification of Resistance Genes to BRAF Inhibitor in Melanoma by piggyBac Transposon Activation Mutagenesis Screen

GSE125642: RNA-sequencing of human mammary epithelial cells (HMLEs) engineered to express either ER or ER-SOX4 with and without 4-OHT to induce nuclear translocation

GSE128133: Transcriptome sequencing ofSKA3 knockdown laryngeal squamous cell carcinoma cells

GSE112022: Control of early B cell development by mRNA N6-methyladenosine

GSE123861: Analysis of SIN3A/B functions within HEK293T cells.

GSE123526: Differentially expressed genes in hematopoietic stem cells after loss of Mettl3

GSE75487: Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during Epithelial-to-Mesenchymal Transition [EMT.time course]

GSE127251: Transcriptome differences between white and brown adipose tissue from wildtype and uncoupling protein 1 knockout mice exposed to different diets and ambient temperatures

GSE123467: Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model

GSE112582: Gene expression signature of brown and inguinal white fat of mice kept at 30C vs. 5C

GSE125015: Translational profiling of proximal tubule in fibrotic kidney

GSE125719: Transcriptomic analysis of LSD1i-sensitive and resistant AML cells

GSE125301: Inhibition of Phosphoinositide-3-kinase signaling promotes the stem cell state of trophoblast

GSE135945: Integrative Epigenomic and Transcriptomic Analysis Reveals Robust Metabolic Switching During Intermittent Fasting in the Brain

GSE124521: MARS Seq data from primary cortical neurons

GSE124649: Analysis of mouse lymph node fibroblastic reticular cells (FRC) gene signature during autoimmune inflammation (EAE)

GSE126345: Transcriptome analysis of different brain areas in Hcrt gene and Hcrt cell ablated mice

GSE129821: Shox2 deficiency leads to a unique loss of the palatine process of the maxilla

GSE114231: Transcriptome Analyses of Loss of Pitx2 Gene Function at Fetal/Neonatal Mouse Muscle

GSE128295: UM171 expands distinct types of myeloid and lymphoid progenitors from human pluripotent stem cells.

GSE123485: Human models of NUP98-KDM5A megakaryocytic leukemia contribute to uncover new biomarkers and therapeutic vulnerabilities

GSE119697: Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition

GSE119713: Insulin signaling and reduced glucocorticoid receptor activity attenuate post-prandial gene expression in liver

GSE145215: Transcriptional changes in Krt13 knockout mouse tongues

GSE125732: Gene expression and whole-transcriptome analysis of heart tissue isolated from mutant transgenic mice after 16 weeks of treatment with AAV9-M7.8L shRNA

GSE151356: RNAseq anaysis of entorhinal cortex layer II neurons upon Ptbp1 modulation

GSE115899: FoxA1 and FoxA2 are required for gastric differentiation in NKX2-1-negative lung adenocarcinoma [total RNA-seq analysis]

GSE115282: Transcriptional regulation of Th17 differentiation by mitochondrial oxidative phosphorylation

GSE123950: Chemotherapeutic agent doxorubicin alters uterine gene expression in response to estrogen in ovariectomized CD-1 adult mice

GSE115904: Unique transcriptional architecture in airway epithelial cells and macrophages shapes distinct responses following influenza virus infection ex vivo.

GSE113027: KLF15-WntDependent Cardiac Reprograming Up-Regulates SHISA3 in the Mammalian Heart

GSE125725: RNA-seq and ribosome profiling of heat shocked wild type and Mettl14 -/- mouse embryonic stem cells

GSE115900: FoxA1 and FoxA2 are required for gastric differentiation in NKX2-1-negative lung adenocarcinoma [single cell analysis]

GSE114906: Quantitative Analysis of Musashi2-reporter positive and Musashi2-reporter negative KPf/fC pancreatic cancer cell transcriptomes

GSE140046: Analysis of transcriptome in dorsal hippocampus in response to over-expression of hepatic leukemia factor (Hlf) in dentate gyrus neurons

GSE157008: Redundant type II cadherins define neuroepithelial cell states for cytoarchitectonic robustness

GSE124954: Genetic and Behavioural Requirements for Structural Brain Plasticity

GSE142432: Tissue neutrophil heterogeneity in germ free mice

GSE123484: Loss-of-function of PTPN2 promotes pathogenic loss of FoxP3+ in RORgt+ Tregs [RNA-seq]

GSE124063: The Bone Marrow Protects and Optimizes Immunological Memory during Dietary Restriction

GSE135434: Tumour Cell Heterogeneity Instructs Fibroblast Diversity and Reciprocal Signalling [dataset 2]

GSE125748: Whole transcriptome sequencing of 6.5 d.p.c embryos

GSE145246: RNA sequencing LSK cells after Cxxc5 knockdown

GSE123345: Tristetraprolin targets Nos2 expression in the colonic epithelium

GSE136105: Gene expression profiling in lung and breast cancer cells treated by Bloom-specific siRNAs

GSE123815: Developmentally programmed tankyrase activity upregulates -catenin and licenses progression of embryonic genome activation

GSE124266: TREM2 regulates microglial cholesterol metabolism upon chronic phagocytic challenge [bulk RNA-seq]

GSE119701: PHF7 Links H3K4 Methylation to H2A Ubiquitination During Spermiongenesis [RNA-seq]

GSE116515: The inner ear heat shock transcriptional signature identifies otoprotective compounds against aminoglycoside ototoxicity

GSE113164: Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

GSE124089: Malt1 protease is critical in maintaining function of Treg cells and may be a therapeutic target for anti-tumor immunity

GSE126355: Gene expression analysis of mouse alveolar macrophages and whole-blood from mice with contained Mycobacterium tuberculosis infection

GSE131075: Effect of Omomyc treatment on MYC mediated transcription

GSE134580: Obesity tuning human Sperm RNA Chromatin remodeler cofactors, RNA interactors, Writers and Erasers