Explore curated data sets and assays

Pluto has a large database of published data, available to explore, conduct your own analysis, and view QC reports.

Sequencing-based assays (Page 78)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 78)

GSE133828: Hematopoietic stem cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia [RNASeq_Cdx2_secondaryAML]

GSE121688: Gene expression profiles in Norad+/+ and Norad-/- brains and spleens [RNA-seq]

GSE123115: Gene expression profile in Liver of young and old mice with MANF overexpression

GSE122593: Dynamic expression of Id3 defines the stepwise differentiation of tissue-resident regulatory T cells

GSE111778: Comparing the effects of low protein, high carbohydrate diets and caloric restriction on brain aging in mice.

GSE123427: Temporal gene expression patterns (Next Generation Sequencing) in liver tumourigenesis of hepatocyte-specific deletion of shp2 and/or pten

GSE127936: Early commitment genes drive fast, irreversible commitment to human embryonic stem cell differentiation (RNA-seq data set 2)

GSE122132: SOS1-mutant cells share a similar transcriptional profile as KRAS G12V cells

GSE115091: Transcriptomic profiling of E9.5 mouse embryos lacking the lipoprotein receptor SR-B1

GSE129770: PS2APP sorted cell types

GSE111501: A homeostatic Arid1a-dependent permissive chromatin state licenses hepatocyte responsiveness to liver injury-associated YAP signaling (RNA-seq)

GSE121827: RNA_seq analysis on Tfh and Treg before and after abatacept treatment

GSE122106: RNA Sequencing Data in control and Acvr1:Nfatc1Cre mouse aortic valve tissues (4 months old)

GSE111806: Anti-PD-L1 antibody direct activation of macrophages contributes to an abscopal response in murine brain tumors

GSE124548: Transcriptomic Responses to Lumacaftor/Ivacaftor Therapy in Cystic Fibrosis

GSE121446: RNA-seq profiling of plasmacytoid and conventional dendritic cells from wildtype and PU.1 knockout mice

GSE125043: Next Generation Sequencing Quantitative Analysis of Wild Type and AML1-ETO Related Fusion Circular RNA (F-CircAE) Knockdown Kasumi-1 Cells Transcriptomes

GSE122131: Genome transfer for the prevention of female infertility caused by maternal gene mutation

GSE122304: PolyA-sequencing in IMR-32 neuroblastoma cells with shRNA mediated depletion of CDK12, CDK13 or GFP.

GSE124693: Coordination of hunger and sleep through circadian regulation of transcription in energy-sensing neurons

GSE121469: Pluripotent stem cell-derived myogenic progenitors remodel their molecular signature upon in vivo engraftment [RNA-seq]

GSE155667: ELL facilitates RNA Polymerase II mediated transcription of human epidermal proliferation genes

GSE122168: Identification of ADAR1 adenosine deaminase dependency in a subset of cancer cells

GSE121251: Foxp1 is critical for the maintenance of Treg cell quiescence and suppressive function

GSE111473: RASA3 regulates the balance of pTh17-Th2 reciprocal programs.

GSE112223: Organ-specific translation elongation rates measured by in vivo ribosome profiling

GSE112461: Azacitidine Modulates the Mesenchymal Stromal Cell Compartment in Myelodysplastic Syndromes

GSE121922: Transcriptomic and gene ontology profiling of the human corneal cell types

GSE121366: Gene expression profiling of Foxr2-induced brain tumors

GSE126050: Phospho-small RNA-seq reveals circulating, extracellular mRNA/lncRNAs as potential biomarkers in human plasma: Hematopoietic Stem Cell Transplant [HSCT]

GSE122167: Impact of UCP1 and FGF21 for the development of diet-induced obesity at standard housing temperatures

GSE133734: FXR isoform selective transcriptional activation in mouse liver organoids

GSE121007: Deciphering clonal evolution and dissemination of Multiple Myeloma cells in vivo

GSE121482: RNA-seq of Treg and Tconv subsets from murine spleen

GSE112002: Expansion of Islet-Resident Macrophages Leads to Inflammation Affecting Beta Cell Proliferation and Function in Obesity

GSE121896: Evidence for HOXC6 as a potential molecular marker for non-small cell lung cancer

GSE130031: Estrogen receptor-depended gene signatures in the mouse mammary gland after acute estradiol treatment (RNA-Seq)

GSE122071: Cap-specific terminal N6-methylation of RNA by an RNA polymerase II-associated methyltransferase.

GSE118780: Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells

GSE124951: Transcriptome analysis of U1 snRNA overexpression in human neurons

GSE123405: Single cell RNA-sequencing Identification of Novel Cell-specific Expression of Lung Disease-related Genes in the Human Small Airway Epithelium

GSE121951: polyA RNA Sequencing Analysis of HTR-8/SVneo cells after lnc-SLC4A1-1 overexpression

GSE111847: KDM5B decommissions the H3K4 methylation landscape of self-renewal genes during trophoblast stem cell differentiation [RNA-seq]

GSE123434: Dual RNA-seq of Neisseria gonorrhoeae and human neutrophils

GSE121534: Differentiation enhances Zika virus infection in neuronal brain cells

GSE124185: Co-repressors Mtg8 and Mtg16 regulate niche exit and early fate decision of crypt stem cells (RNA-seq)

GSE112764: DDX6 decouples translational repression from RNA degradation of miRNA targets [ESC EpiLC 4sU]

GSE126066: Nanoparticle-coupled topical methotrexate effectively inhibits inflammation and induces re-modeling in pre-clinical psoriasis

GSE122080: Transcriptomics analysis of the livers of old mice treated with Ouabain

GSE121796: C5aR1 regulates T-follicular-helper differentiation and chronic graft-versus-host disease bronchiolitis obliterans

GSE121893: Dissecting cell composition and cell-cell interaction network of human disease heart tissue by single-cell sequencing

GSE123262: miRNA expression profiles and molecular networks in resting and LPS-activated BV-2 microglia - Effect of cannabinoids

GSE123414: Physical and molecular landscapes of mouse glioma extracellular vesicles define heterogeneity

GSE123757: Microglia in developing retina transition through a disease-like functional state that does not require CSF1R signaling for survival

GSE125154: Chromatin assembly factor HIRA is essential for the maintenance of hematopoiesis

GSE126357: Inguinal LN cDC1 SubQ KPC

GSE120877: Bacterial sepsis triggers an antiviral response that causes translation shutdown

GSE121703: The X chromosome gene Kdm6a modulates multiple immune response genes in CD4+ T cells and is disease promoting in autoimmune disease

GSE123420: Taggera Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice [Ribo-Tag-RNA-seq]

GSE124621: PGRMC2 is an Intracellular Heme Chaperone Critical for Adipocyte Function

GSE112939: Myeloid Skewing in Aging Bone Marrow Depends on Long-lived Plasma Cell Accumulation

GSE123805 (mouse): Transcriptome of activated human and mouse MAIT cells

GSE111734: Astrocytic trans-differentiation completes a multicellular paracrine feedback loop required for medulloblastoma tumor growth

GSE124590: Safety profiling of genetically engineered Pim-1 kinase overexpression for oncogenicity risk in human c-kit+ cardiac interstitial cells

GSE134576: Clonally expanded CD8 T cells patrol Alzheimer's cerebrospinal fluid [TEMRA]

GSE124726: ASO-mediated RNA Suppression through Targeted Epigenetic Reprogramming of the Hdac2 Gene

GSE126720: Genome-wide studies identify genes directly regulated by PML/RAR fusion protein

GSE128069: A comparison of the transcriptional profiles of invariant NKT cells derived from Wild type and Eomes conditional knockout mice

GSE128333: Deconvolution of Transcriptional Networks Identifies TCF4 as a Master Regulator in Schizophrenia

GSE129820: Bone Morphology is Regulated Modularly by Global and Regional Genetic Programs

GSE123149: RNA-sequencing of murine WT and MAZR-cKO FOXP3+ regulatory T cells (Treg cells)

GSE124728: Single cell multi-omics analysis reveals novel roles for DNA methylation in sensory neuron injury responses

GSE126925 (human): The transcription factor IRF4 plays a critical role in plasma cell identity and function

GSE116993: F-actin dynamics regulates mammalian organ growth and cell fate maintenance

GSE122099: Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1

GSE123392: MARS-seq2.0 an experimental and analytical pipeline for indexed sorting combined with Single-cell RNA sequencing

GSE123807: Combined MEKi (GDC-0973) and WNT (G007-LK) treatment in APC and KRAS mutant HCT-15 cell line

GSE125621: SPT6-driven error-free DNA repair safeguards genomic stability of glioblastoma cancer stem-like cells