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Sequencing-based assays (Page 20)

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Explore curated data sets and assays

Sequencing-based assays (Page 20)

GSE100070: Formin 2 Links Neuropsychiatric Phenotypes At Young Age To An Increased Risk For Dementia

GSE86065: Time course effects of a latent carcinogen in mice

GSE90976: TET2 loss and the lymphoma-associated RHOA mutation cooperate to disrupt CD4+ T cell function through inactivation of FOXO1

GSE96561: Gene expression profile during cardiac stress induced by transverse aortic constriction (TAC) and myocardial infarction (MI) with or without BET protein inhibitor JQ1 in mouse hearts

GSE110325: Mycobacterium tuberculosis tRNA induces IL-12p70 via synergistic activation of pattern recognition receptors within a cell network.

GSE135981: A NeuroD1 AAV-Based Gene Therapy For Functional Brain Repair After Ischemic Injury Through In Vivo Astrocyte-To-Neuron Conversion

GSE94549: Effect of MDK expressing Melanoma cells conditioned media in Human LEC

GSE90913: Altered Nucleocytoplasmic Proteome and Transcriptome Distributions in an In Vitro Model of Amyotrophic Lateral Sclerosis

GSE85414: Protection against maternal infection-associated fetal growth restriction: proof-of-concept with a microbial-derived immunomodulator

GSE102231: High TCR self-reactivity drives regulatory T cell function during tissue-specific autoimmunity

GSE109908: RNA seq from liver samples of C57BL/6 mice to study the gene expression synchrony of Plasmodium stages with host circadian cycle.

GSE95201: Gene expression profiles of liver and lung endothelial cells during normal and upregulation of Wnt/beta-catenin signaling

GSE94238: RNAseq analysis of B cells inducible for murine gammaherpesvirus 68 reactivation

GSE94898: Heme and GATA1 coordinately regulate erythroid differentiation [RNA-seq]

GSE86909: NFIA regulates pancreatic cell fate and adult physiology through vesicle trafficking

GSE92887 (mouse): Impact of HypERrlnc Knockdown on the human pericyte transcriptome

GSE90908: Characterization of meningeal type 2 innate lymphocytes and their response to CNS injury

GSE96957: TWEAK mediates inflammation in experimental atopic dermatitis and psoriasis

GSE90891: Rb and p53 cooperate to suppress prostate cancer lineage plasticity, metastasis, and antiandrogen resistance

GSE94018: Hippocampus-dependent learning and memory deficits by abnormalities in presynaptic plasticity in LSD1 knock-in mice

GSE101629: Effects of Inhibition of CDK8/19 Mediator Kinase by Senexin B in HEK293 cells treated with or without TNF-alpha

GSE107868: RNA-sequencing and swarm intelligence-enhanced classification algorithm development for blood-based disease diagnostics using spliced blood platelet RNA

GSE128177: Skeletal Muscle Transcriptional Networks Linked to Motor Unit Remodeling in Human Parkinsons Disease

GSE103949: Next Generation Sequencing for Quantitative Expression Analysis of Wild Type and Nrf1 deficient Liver Transcriptomes from Regular Diet (RD) or High Cholesterol Diet (CholD) fed mice

GSE94902: Differential gene expression in IDH1-R132H low grade glioma animal brain tumors brain in response to 20 Gy of radiation

GSE92376: Gene expression profile of regulatory T cell (Treg) subsets from CD28-deficient mouse

GSE112538: Spop restrains inflammation-induced emergency hematopoiesis by targeting MyD88 [Bulk RNA-Seq]

GSE96077: Genome Scale Analysis of miRNA and mRNA regulation during preterm labor [monocytes]

GSE101511: HnRNPGT knockout disrupts pre-mRNA splicing and arrests sperm development prior to meiotic metaphase

GSE102244: Zika Virus Has Oncolytic Activity against Glioblastoma Stem Cells

GSE108378: Exploring transcriptomic landscapes in red cell populations, in their extracellular vesicles and on single cell level

GSE103124: Gene expression profiling of wild type and BMPR1a-deficient CD4+ T cells

GSE108601: RNA sequencing for transcriptome comparison between HTLV-1 Tax(-) and Tax(+) cells in Adult T-cell leukemia cell lines (MT-1 and KK-1)

GSE140487: Expression profiling of Tex15 wt, Tex15 ht and Tex15 ko germ cells

GSE117664: Stage-specific transcriptome analysis during differentiation from pluripotency to glial restricted progenitor stages

GSE107885: Mta2, a component of the NuRD complex, regulates B cell development and cooperates with OCA-B in controlling the pre-B to immature B cell transition (RNA-Seq)

GSE117590: Mouse gonadal transcriptome at 12.5dpc, 13.5dpc, 16.5dpc and 6dpp.

GSE92761: Multiple mechanisms of global microRNA suppression in vertebrate oocytes [RNA-seq]

GSE101521: Whole-transcriptome brain expression and exon-usage profiling in major depression and suicide

GSE107980: RING-finger protein 6 amplification activates JAK/STAT3 pathway by modifying SHP-1 ubiquitylation and associates with poor outcome in colorectal cancer

GSE99924: 4sU-seq analysis of Xist-mediated chromosomal silencing

GSE134419: Transcriptomic characterization of CRISPR/Cas9-edited THP1 cells to test the effect of disrupting the 3q23 genomic region containing TB-risk associated variants marking a putative monocyte-specific enhancer

GSE126109: RNA sequencing analysis of selumetinib-resistant CRC cells lines

GSE87450: Renal Fanconi syndrome and hypoposphatemic rickets in mice deficient for retroviral receptor XPR1 in the nephron

GSE110971: Sm eggs Virtual memory T cells

GSE83720: Atr maintains chromosomal integrity during postnatal cerebellar neurogenesis [RNA-Seq]

GSE107060: Transcriptomic analysis of mouse embryonic stem cells during early differentiation and the effect of mTORC1 regulators knockout

GSE109431: Transcriptional analysis of adult LRH-1 knockout livers reveals a novel role for LRH-1 in hepatic lipid homeostasis and phospholipid remodeling

GSE84234: Epigenetic restriction of embryonic and extraembryonic lineages mirrors the somatic transition to cancer (RNA-seq)

GSE113075: Exacerbated S. aureus foot infections in obese/diabetic mice are associated with impaired germinal center reactions, Ig class-switching, and humoral immunity.

GSE108356: Epigenetic regulation of brain region-specific microglia clearance activity

GSE93918: Gene expression patterns after chronic clozapine in wild type mice and HDAC2 conditional knock-outs

GSE100148: ATRX mutant neuroblastoma is sensitive to EZH2 inhibition via modulation of neuronal differentiation

GSE108362: Spontaneous DIPG Modeling Reveals Novel H3.3 K27M-Mediated Oncogenic Mechanisms Acting Through Epigenetic Effects [RNA-seq]

GSE101712: Single cell RNA-sequencing of Mbd3-null and control lymphoid progenitor cells

GSE108359: Repression of Ect2 induces cytokinesis failure and decreases heart muscle cell proliferation in congenital heart disease

GSE94408: Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone [IMR90_MCF7_RNA-Seq]

GSE115503: RNA-Seq analysis of skin from bleomycin induced scleroderma murine models treated with EHP-101

GSE83506: Ezh2 Inhibition is Bone-anabolic and Osteoprotective in Skeletally Mature Mice

GSE95243: Transcriptomes of iPSC-derived and post-mortum Hypothalamus Neurons from obese and control donors

GSE92874: Genome-wide transcriptome profiles in Control and Schizophrenia hiPSC-dervied NPC [RNA-seq]

GSE127522: Young and Old Mouse Parabiosis Hematopoietic Stem Cell RNA Sequencing

GSE102305: Strand-oriented RNAseq of LNCaP prostate cancer cells in culture for 24h in the presence of androgen

GSE114382: First Clinical Study Targeting ROR1, A Cancer Stem Cell Antigen Involved In Rho-GTPase Activation

GSE112594: Elevated T cell levels in peripheral blood predict poor clinical response following rituximab treatment in new-onset type 1 diabetes

GSE111079: Characterization of murine hepatoma cells with regard to their dependence on cyclin E1

GSE112586: RNA transcriptome sequencing analysis of SGC-7901 cells transfected with ENST00000431060 shRNA or control shRNA

GSE131397: Systematic evaluation of RNA-Seq preparation protocol performance (RNASeq: TruSeq)

GSE83897: Transcriptomes analysis of mammary tumors induced by overexpression of the Ret receptor tyrosine kinase from a new transgenic mouse model

GSE103840: Single-cell RNA sequencing of sensory neurons in the mouse dorsal horn

GSE95837: Single cell gene expression in Dlxi1/2b::eGFP+ cells before and after migration, 4 weeks

GSE108446: Gene expression profile for B6 wild-type and B6 Bgn gene knockout mice (Bgn0/-) with and without fructose treatment by RNA-Seq

GSE109083: Transcriptomic analysis of microglia from 7 week Npc1 disease mouse model treated or not with 4000mg.kg-1 HPBCD

GSE83931: Sex differences in the molecular signature of the developing mouse hippocampus

GSE112591: Gene expression signatures of innate lymphoid cells from human blood

GSE112609: RNA-seq data from double positive thymocyte and CD4 or CD8 single positive spleen T cell

GSE90890: Osteoblast-specific deletion of Hrpt2/Cdc73 results in high bone mass and increased bone turnover

GSE90950: RNA-Seq of human PDA cell lines transfected with control siRNA or Pdx1 siRNA