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Sequencing-based assays (Page 19)

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Explore curated data sets and assays

Sequencing-based assays (Page 19)

GSE104227: Epigenomes and Transcriptomes of human macrophages after ex vivo exposure to mevalonate

GSE106436: Hemophilia mice treated with antisense oligonucleotides targeting either Upf1 or Upf3b

GSE108242: RNA-seq profiling of mouse embryonic fibroblasts from Kat6a knockout and wildtype mice

GSE84548: Loss of Uhrf1 in neural stem cells leads to activation of retroviral elements and delayed neurodegeneration [P5]

GSE93526: Gene signature profiles in respiratory epithelium infected with nontuberculous mycobacteria

GSE92852: Generation and functional characterization of MDSC-like cells

GSE96035: Class I histone deacetylases HDAC1, 2 and 3 are histone decrotonylases

GSE106927: Transcriptional profiling of macrophages derived from injured nerves at 3 and 8 days post-injury

GSE129518: Circadian gene expression in mouse gastrocnemius muscle after deletion of SIRT1 in SF1 neurons

GSE86209: Hhex regulates HSC self-renewal and stress hematopoiesis via repression of Cdkn2a

GSE104940: Cytoplasmic Miz1 Suppresses TNF--Induced NF-B Activation and Hepatocellular Carcinoma Progression via the Interaction with Metadherin

GSE92842: Single cell mRNAseq of Olfactory Epithelium and Neurog1-eGFP+ progenitors

GSE129999: RNA-sequencing of microglia from IL-5 or PBS treated aged (20mos) mice

GSE93131: The transcription factor Sox2 regulates AID expression in class switched B cells

GSE98725: Transcriptional Regulation by NFATc1 in CD8+ T cells [RNA-seq]

GSE109434: Knockdown of Tis7 in mouse erythroblasts

GSE94800: Quantification of differential gene expression by multiplexed targeted resequencing of cDNA

GSE95685: RNA-seq analysis of mouse liver transcriptome following exposure to TCPOBOP or PCN

GSE93629: Synectin Promotes Fibrogenesis by Regulating PDGFR Isoforms Through Distinct Mechanisms

GSE137999: RNA-seq of mouse small intestine samples from different Fecal Microbiota Transplantation treatment groups

GSE109257: Comparison of expression profiles of SCD::Keap1F/F and SCD::Keap1F/F::Tie1-Cre mouse pulmonary primary endothelial cells(MPPCECs)

GSE83876: Transcriptome comparison of oocytes treated with RNAi against Btg4 or with control siRNAs

GSE96950: Cell type-specific alternative splicing during mammalian neuronal differentiation

GSE120946: Bcl11b prevents catastrophic autoimmunity by controlling multiple aspects of regulatory T-cell gene expression program [RNA-Seq]

GSE99468: RNA-Seq profiling of day 7 and day 18 kidney organoids differentiated in two batches

GSE104089: Cell type-specific dysregulation of ERK signaling impairs synaptic plasticity and memory in a mouse model of Noonan syndrome

GSE121184: chrRNA-seq in wild-type, SmcHD1 MommeD1mut and somKO MEFs

GSE119551: Effects of transcription factor CEBPA knockdown on vitamin D target gene regulation in THP-1 cells

GSE107626: RNA-seq expression profiling of Suz12-deleted or wild-type organoids derived from basal or luminal mouse mammary epithelial cells.

GSE106116: CD90 Identifies Adventitial Mesenchymal Progenitor Cells in Adult Humans

GSE100183: MYCL and EP400 are required for Max and MCPyV mediated gene activation

GSE121002: Single-cell gene expression of anti-viral WT and Thpok-deficient effector and memory T cells

GSE99372: Erythropoietin Signaling Regulates Key Epigenetic and Transcription Networks in Fetal Neural Progenitor Cells

GSE100261: Transcriptional impact of MTHFD2 in Human Aortic Endothelial Cells

GSE110972: H3.3K4M targets MLL3/MLL4 to prevent enhancer activation in adipogenesis

GSE104756: Differential gene expression tools exhibit substandard performance for long non-coding RNA-sequencing data

GSE106699: RNA sequencing of 13 T-cell acute lymphoblastic leukemia patients (5 TCRAD-MYC translocated T-ALL_8TAL1-LMO2 T-ALL)

GSE107334: Insulin receptor associates with promoters genome-wide and regulates gene expression [RNA-seq]

GSE93107: Transcription factor Hoxb5 reprograms B cells into functional T lymphocytes [RNA-Seq]

GSE104282: Epigenomes and Transcriptomes of human monocytes from Hyper IgD Syndrome (HIDS) patients

GSE94518: Hypertonic saline attenuates the cytokine-induced pro-inflammatory signature in primary human lung epithelia

GSE109530: HDAC3 restrains cytokine signaling during thymocyte development for the generation of CD4 T cells (RNA-Seq)

GSE94892: Transcriptome analysis for identification of novel biomarker for disease progression in Dengue patients

GSE100327: RNA-sequencing profiles of five different pancreas cancer cell lines that were engineered to express a form of the basic helix-loop-helix transcription factor, E47, that localizes to the nucleus in response to tamoxifen.

GSE107693: Comparing oestrogen-responsive genes in endometrial and breast cancer cell lines

GSE100215: Functional co-operativity of long-noncoding RNAs at the neuroblastoma susceptibility locus 6p22.3 controls disease progression via USP36-CHD7-SOX9 gene regulatory axis.

GSE117631: Gene expression profile of DLBCL cells emerged in Cg1-Cre Spi1 KO mice

GSE112469: Impact of ERG and PTEN loss on RNA expression

GSE86301: The Cdc42/Rac1 regulator CdGAP is a novel E-cadherin transcriptional co-repressor with Zeb2 in breast cancer

GSE105128: KAP1 regulates Treg function and proliferation.

GSE109661: Gata4-dependent differentiation of c-Kit+ derived endothelial cells underlies deceptive cardiomyocyte regeneration in the heart

GSE98242: The AP-1 Transcription Factor JunB Is Required for Th17 Cell Differentiation

GSE101432: Comprehensive transcriptome analysis in human liver

GSE107732: RNAseq data from FACS-sorted CD45hi cells from mouse brain from control mice (uninjected) or LPS-injected mice in the context of A20 knockout

GSE90878: An erythroid-specific enhancer of ATP2B4 mediates red blood cell hydration and malaria susceptibility [RNA-seq]

GSE109376: Cardiac fibroblasts behave differently to isoproterenol-induced injury based on their genetic variability

GSE111564: Gene Expression in COP1-ETV1-ETV5-cJun deficient mouse brain

GSE107411: Functional Genomic Analyses of Hep-G2 Cell Line after FTO knockdown

GSE101504: Profiling of untreated and residual murine BCC after Hedgehog Pathway Inhibitor (HPI) treatment

GSE106225: Multi-axial self-organisation properties of mouse embryonic stem cells into gastruloids [bulk]

GSE109722: Marfan syndrome in mice

GSE90906: Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cells

GSE106851: Landscape of H3K4me3 in human CD19 cells

GSE121142: Bcl9 and Pygo synergize downstream of Apc to effect intestinal neoplasia in mouse models recapitulating Familial Adenomatous Polyposis (RNA-Seq)

GSE119579: RNA sequencing of Asthmatic Human Airway Smooth Muscle Cells II

GSE118828: Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq

GSE107000: RNAseq analysis of ruxolitinib treated breast cancers

GSE107760: Characterising the key metabolic pathways of the neonatal mouse heart using an untargeted quantitative combinatory -omics approach

GSE95013 (mouse): AICDA-induced epigenetic plasticity accelerates germinal center-derived lymphomagenesis

GSE106804: Engineered Nanointerfaces for Microfluidic Isolation and Molecular Profiling of Tumor-specific Extracellular Vesicles

GSE107746: Transcriptome Landscape of Human Folliculogenesis Reveals Oocytes and Granulosa Cells Interactions

GSE129539: MiR-29 regulates de novo lipogenesis and controls circulating triglyceride levels in a Sirt1-dependent manner

GSE96552: Genome-wide profiling of somato-dendritic mRNA distribution in the hippocampus in RNG105/caprin1 conditional knockout (cKO) mice

GSE106178: Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from Type2 diabetes patients: rescue by alpha-ketoglutarate and TET-TDG functional reactivation [mouse muscle RNA-seq]

GSE113900: RNA-Sequencing analysis of differential gene transcription profiles induced by the prenatal/maternal broccoli sprout (BSp) diet

GSE134570: Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

GSE110316: Investigation of mRNA expression pattern by over-expression of two CEBPB transcription factor isoforms

GSE94155: A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells