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Sequencing-based assays (Page 16)

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Explore curated data sets and assays

Sequencing-based assays (Page 16)

GSE89917: Targeting the androgen receptor N-terminus via the cochaperone Bag-1L [RNA-Seq KO]

GSE81285: mTor inhibition induces a paused pluripotent state

GSE94784: RNASeq of adipocytes from ROSA vs BMPR2 DELX mice

GSE108688: GR cistromes reprogramming by High Fat Diet [RNA-seq]

GSE99707: RSK2-regulated gene signature associates with ER+ breast cancer

GSE131299: The role of CIC in brain development and neuronal differentiation (RNA-Seq)

GSE98860: Mtor knockout in PDAC cells

GSE94840: ALOX5 exhibits anti-tumor and drug-sensitizing effects in MLL-rearranged leukemia

GSE81286: Transcriptional profiles of skeletal muscles in mice exposed to acute hypoxia

GSE89020: Parallel transcriptional programs driving early-starting inheritable lineage bias of myeloid, lymphoid and dendritic cells are initiated by distinct dosage of PU.1 and IRF8 in HSCs

GSE84517: Opposing macrophage-polarization programs show extensive epigenomic and transcriptional cross-talk [RNA-Seq]

GSE105070: RNA sequencing of control and CTCF-null embryonic day 14 telencephalon

GSE98585: Gene expression profiling of continuous growth hormone infused (cGH) adult male mouse liver by RNA-seq analysis of rRNA-depleted liver RNA. [G137_G138]

GSE100026: Transcriptome characterization of chronic myeloid leukemia by RNA sequencing

GSE100827: Analysis of transcriptome profiling in liver tissues of wild-type and SREBP1c knockout mice using RNA-seq

GSE99231: ZFR coordinates crosstalk between RNA decay and transcription in innate immunity

GSE89495: Efficient Mammary Gland Involution Requires c-Jun N-terminal kinase

GSE98950: Transcriptomics profiling of CD141+ dendritic cells isolated from peripheral blood or synovial fluid of arthritis patients

GSE98559: Expression Profiling of Cisplatin Resistant SKOV3 Cell Lines vs. Wild Type SKOV3 Cell Lines

GSE102881: Transcriptomic analysis of healthy donor and Sickle Cell Disease (SCD) hematopoietic stem/progenitor cells

GSE92770: Tissue-specific histone variant exchange during transcriptional activation and the link with pre-mRNA splicing factors

GSE112365: A SIRT1-centered Circuitry Regulates Breast Cancer Stemness and Metastasis

GSE89226: Analysis of gene expression (RNAseq) from shTP53:RB1 LNCaP/AR cell lines

GSE111347: RNA-sequencing of Adult Mouse Pillar and Deiters Supporting Cells of the Organ of Corti

GSE99824: Molecular pathogenesis of human prostate basal cell hyperplasia reveals a keratinocyte metaplasia

GSE106885: Epigenome-wide Effects of Vitamin-D on Bronchial Epithelial Cells using ATAC-Seq and RNA-seq

GSE100402: Mouse natural killer cells response to DKK2 treatment

GSE100859: mRNA-Seq profiling of human developing kidney

GSE89365: DDX54 regulates transcriptome dynamics during DNA damage response [4SU-seq]

GSE106984: SOX10 Single Transcription Factor Based Fast and Efficient Generation of Oligodendrocytes from Human Pluripotent Stem Cells

GSE100576: Subcellular RNA fractions of HSV-1 infected primary human fibroblasts

GSE114966: Transcriptional change of THP-1 after HSV-1UL37WT or HSV-1UL37C819S

GSE99381: AR-independent prostate cancer is sustained through FGF signaling

GSE100501: The dynamics of cellular response to therapeutic perturbation using multiplexed quantification of the proteome and transcriptome at single-cell resolution

GSE99659: WT Pik3ca2X basal cell expression profile

GSE100610: Genome-wide expression of mRNAs and microRNAs in response to ERI2 knockdown

GSE89767: Enhancer and transcription factor dynamics within the granulocytic-monocytic lineage reveal an early differentiation block in Cebpa null progenitors

GSE100244: Transient Notch Activation Induces Long-term Gene Expression Changes Leading to Sick Sinus Syndrome in Mice

GSE97990: 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (RNA-Seq)

GSE85335: A non-cell autonomous mechanism of beige adipocyte renaissance in subcutaneous adipose tissue

GSE101241: Epigenetic enhancer changes during oncogenic transformation [RNA-seq]

GSE94304: Interrogation of functional cell surface markers identifies CD151 dependency in high-grade serous ovarian cancer

GSE90497: Steatohepatitis progresses to cancer via immunosuppression of HCC directed CD8+ T cells

GSE96685: 2.5 dpc female HPG axis RNASeq of Kdm4a wildtype and knockout mice

GSE130052: RNA-seq analysis of mouse normal penile epithelium and penile squamous cell carcinoma

GSE95079: The effect of Abl kinases,or Ponatinib challenging on breast cancer cells' global transcriptome

GSE89970: Genome-wide map of HAEC chromatin landscape under resting and TNFa, IL1b, and OxPAPC stimulation, with corresponding transcription factor binding and RNA expression

GSE99787: Global mRNA translational landscapes in mouse bone-marrow-derived-macrophage-mediated response to LPS (lipopolysaccharide)

GSE126887: RNA-seq analysis of high fat diet-induced changes in macrophage transcriptome

GSE100278: Next-generation sequencing measuring genome-wide RNA decay by s4U Seq in nave CD4+ T cells from Mettl3 WT and KO mice

GSE85197: RNA-seq of N2a cells treated with 100 nM Dexamethasone for 4 hours +/- siARGLU1

GSE100099: p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

GSE103354: A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

GSE112832: SETD2 regulates the maternal epigenome and embryonic development [RNA-seq]

GSE101503: Transcriptome analysis of V336Y mutant mitochondrial ribosomal protein in human HEK293 cell line

GSE113073: Transcription Factor SOX30 Is a Key Regulator of Mouse Spermiogenesis

GSE104820: Opposing roles of dendritic cells subsets in experimental GN

GSE121118: Expression profile (nanoCAGE-seq), chromatin accessibility (ATAC-seq) profile, and histone modification profile (ChIP-seq for H3K4me3, H3K9me3, and H3K27me3) during the course of mouse gonocyte development

GSE100082: Smad4 pathways modulate induction of the chemokine Ccl20 and repress inflammation-induced carcinogenesis in mouse colon

GSE101415: Intestinal IKKa is required for tumor initiation in APC mutant mice

GSE93897: Preclinical Evaluation of Dual mTOR inhibitor, AZD2014, and Castration in Prostate Cancer

GSE90463: Age-Related Gene Expression Changes in Prostate Cancer Patients [RNA-Seq]

GSE93678: A Novel Alzheimer's Disease Drug Candidate Targeting Inflammation and Fatty Acid Metabolism

GSE123463: Total uterus transcriptome after depletion of regulatory T cells at E8 of murine pregnancy

GSE106281: Transriptome profiling of mutant p53 skin deficient in AURORA-A KINASE

GSE106312: Genome-wide RNA-seq from c-MYC-depleted and rescued MDA-MB-231BrM cells

GSE103021: Targeting KRAS mutant cancers with a covalent G12C-specific inhibitor

GSE104964: mRNA profiling of Asns-silenced murine 4T1-T breast cancer cells grown in the presence and absence of Asparagine

GSE106295: Transcriptome of cardiac tissue from WT mice, cardiac macrophages depleted mice, and mice deficient for Mertk and LxR

GSE99548: Biomodal role of H3.3 in safe-guarding and establishing cell identities during reprogramming [RNA-Seq]

GSE83580: RNA-sequencing of Fes KO and WT melanomas

GSE89689: Role of Hmgb1 in hepatocarcinogenesis

GSE82294: RNAseq analysis of heart tissue from mice treated with atenolol and isoproterenol reveals a reciprocal transcriptional response

GSE93069: Transcriptome sequencing (RNA-Seq) of non-tumor kidney tissues from 36 patients undergoing nephrectomy for exploring the metabolic mechanism of sorafenib and identifying the major transcriptional regulation factors in sorafenib metabolism in kidney

GSE101550: Essential roles of mitochondria biogenesis regulator Nrf1 in retina development and homeostasis

GSE106634: ETS1 acts as a tumor suppressor in breast cancer by inhibiting growth-related factors

GSE90461: Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha (Mouse ChIP-seq, RNA-seq, and DNase-seq)

GSE100403: A kinome-wide high-content siRNA screen identifies MEK5-ERK5 signaling as critical for breast cancer cell EMT and metastasis