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Sequencing-based assays (Page 143)

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Explore curated data sets and assays

Sequencing-based assays (Page 143)

GSE146851: CK1 Delta Is an mRNA Cap-Associated Protein That Drives Translation Initiation and Tumor Growth

GSE145115: Inhibition of the SUV4-20 H1 histone methyltransferase increases frataxin expression in Friedreichs ataxia patient cells

GSE147626: Deletion of Glutathione S-Transferase Omega 1 Activates Type I Interferon Genes and Downregulates Tissue Factor

GSE152983: An aberrant cytoplasmic intron retention programme is a blueprint for ALS-related RBP mislocalization

GSE150198: Activation of clustered IFN target genes drives cohesin-controlled transcriptional memory [single-cell RNA-seq]

GSE145316: Pan-cancer molecular analysis of the RB-pathway

GSE146889: RNA-seq Analysis of Archival Colorectal and Endometrial Cancer Samples Reveals Differences in Tumor Mutation Burden According to the Etiology of Defective DNA Mismatch Repair.

GSE145326: FGFR4 is a regulator of tumor subtype differentiation in luminal breast cancer and metastatic disease

GSE145327: Loss of extreme long-range enhancers in human neural crest drives a craniofacial disorder

GSE154253: TNFAIP8 promotes AML chemoresistance by activating ERK signaling pathway through interaction with Rac1

GSE147657: Transcriptional Profiling Uncovers Human Hyalocytes as a Unique Innate Immune Cell Population

GSE146423: Next Generation Sequencing Facilitates Quantitative Analysis of A549 Control and A549 infected with Zika virus Transcriptomes

GSE147394: Two subsets of stem-like CD8+ memory T cell progenitors with distinct fate commitments in humans

GSE154905: Impact of differentiation media on Cystic Fibrosis airway epithelial cells

GSE147334: RNAi Screening Identifies that TEX10 Promotes the Proliferation of Colorectal Cancer Cells by Increasing NF-B Activation

GSE147470: AMPK1 deletion in myofibroblasts exacerbates post myocardial infarction fibrosis by a miR-125b and Connexin 43 mechanism

GSE146788: Functional determinants of sensitivity to CDK4/6 inhibition or cell-cycle plasticity

GSE147770: Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism [RNA-Seq]

GSE153076: An early cell shape transition drives evolutionary expansion of human forebrain

GSE152999: Induced organoids derived from patients with ulcerative colitis recapitulate the colitic reactivity

GSE154164: Transcriptome analysis of CHEK1 overexpression (AC or HC) VS control (A or H) and CHEK1 knockdown (AK_D or HK_D) VS control (AK or HK) in Mutiple Myeloma.

GSE145575: Myogenic Progenitor Cell Lineage Specification by CRISPR/Cas9-based Transcriptional Activators

GSE147413: Targeted suppression of ZNF217-induced AKT signaling inhibits tumor growth and metastasis in osteosarcoma

GSE145628: Pancreatic cancer cells require the transcription factor MYRF (Myelin Regulatory Factor) to maintain ER homeostasis (RNA-Seq).

GSE153032: Spatially discrete signalling niches regulate fibroblast heterogeneity in human lung cancer

GSE145647: Deconvolution of myeloid cell cytokine specific transcriptional profiles during tuberculosis and cancer identifies neutrophil activation as a prognostic feature [whole blood]

GSE147503: Synergistic Anti-Leukemic Effect Of Trc105 And Decitabine In AML Xenografts

GSE146532: RNA-sequencing of bronchial epithelial cells from an adult cohort including asthmatics, COPD and healthy controls, cultured with Rhinovirus 1A

GSE154317: Transcriptional profiling and immunophenotyping show sustained activation of blood monocytes in subpatent Plasmodium falciparum infection.

GSE150873: Glutamine depletion regulates Slug to promote EMT and metastasis in pancreatic cancer [human]

GSE154274: RRBS, RNA-seq of placenta in women with PCOS and RNA-seq of hippocampus and hypothalamus in femal rats born to PCOS rats.

GSE153597: GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control

GSE150005: The MT1G gene in LUHMES Neurons is a Sensitive Biomarker of Neurotoxicity

GSE155482: Regulated expression and function of the GABAB receptor in human pancreatic beta cell line and islets

GSE150619: The Role of Endothelial Autocrine NRG1/ERBB4 Signaling in Cardiac Remodeling

GSE148276: Estrogen receptor alpha mutations in breast cancer cells cause gene expression changes through constant activity and through secondary effects [RNA-seq]

GSE149369: Modelling the developmental spliceosomal craniofacial disorder Burn-McKeown syndrome using induced pluripotent stem cells

GSE150857: Requirement for LIM kinases in acute myeloid leukemia

GSE149428: The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

GSE149390: Importance of RAD6B in activation of canonical WNT signaling in melanoma development

GSE149377: Large-scale production of human iPSC-derived macrophages for drug screening

GSE156471: CRISPR-Cas9 knockdown of RBM48 in K562 cells

GSE154998: Transcriptional Profiling of Leukocytes in Critically Ill COVID19 Patients

GSE155031: Transcriptome analysis of SH-SY5Y neuroblastoma cells treated with copper and copper chelators (Dextran-Catechin - DC, and Tetraethylenepentamine pentahydrochloride - TEPA) in the presence or absence of interferon gamma

GSE150954: Melanocyte precursors in the hair follicle bulge of repigmented vitiligo skin are controlled by RHO-GTPase, KCTD10 and CTNNB1 signaling

GSE148387: Transcriptional Characterization of the Tumor Microenvironment and Prognostic Gene Signatures in Conjunctival Melanoma

GSE148714: Only hematopoietic stem and progenitor cells from cord blood are susceptible to malignant transformation by MLL-AF4 translocations

GSE148473: ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation (RNA)

GSE153291: lincNORS: A Noncoding Regulator of the Cellular Sterol Homeostasis I

GSE152782: Cell-intrinsic Innate Immune Responses against Chikungunya Virus in a Human Ex Vivo Synovial Fibroblast Model

GSE149602: A deep intronic splice mutation of STAT3 underlies hyper IgE syndrome by negative dominance

GSE150753: Absence of cGAS-Mediated Type I IFN Responses in HIV-1-Infected T-Cells

GSE148517: Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives

GSE150880: Inhibition of O-GlcNAcylation via O-GlcNAc transferase fosters megakaryopoiesis and induces thrombopoiesis

GSE155212: Quantitative mapping of transcriptome dynamics during polarization of human iPSC-derived neurons

GSE152446: Cigarette Smoke Induces NOTCH3 Activation to Promote Goblet Cell Differentiation in Nonsmoker and COPD Airway Epithelial Cells

GSE151079: RNAseq of 11 subsets of developing human postnatal thymocytes

GSE151765: ERK5 is required for tumor growth and maintenance through regulation of the extracellular matrix in triple negative breast cancer

GSE150588: Competition between PRC2.1 and 2.2 subcomplexes regulates PRC2 chromatin occupancy in human stem cells

GSE153388: Inflammatory transcript signatures and activated regulatory T lymphocytes in melanoma metastases

GSE149664: Generation of induced motor neurons (iMNs) from human fibroblasts facilitates locomotor recovery after spinal cord injury

GSE151820: RUNX2 is a dependency factor in immature and KMT2A-rearranged T-cell acute lymphoblastic leukemia [KARPAS-45 RUNX2 shRNA knockdown RNA-seq]

GSE152547: RNA-seq studies of Rhinovirus Response in asthma cases and non-asthma controls

GSE155457: Genome-wide analysis of the FOXA1 transcriptional network identifies novel protein coding and lncRNA targets in colorectal cancer cells

GSE150716: p53-induced RNA-binding protein ZMAT3 is splicing regulator that inhibits the splicing of oncogenic CD44 variants in CRC [RNA-seq_UPF1]

GSE155495: Multiscale Analysis of Extracellular Matrix Remodeling in the Failing Heart

GSE148659: Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myeloma

GSE148669: Sodium chloride generates anti-inflammatory Th17 cell responses but amplifies Th17 cell pathogenicity in pro-inflammatory cytokine microenvironments

GSE156259: CMV-specific cytotoxic T lymphocytes (CTLs) RNA-seq at the late phase of allo-HCT

GSE148817: Cell-intrinsic differences between human tracheal epithelial cells from children and adults [cultured basal cells]

GSE148896: Transcriptomic changes in response to modulation of long-non-coding RNA, LINC00473

GSE152819: Characterization of universal features of partially methylated domains across tissues and species

GSE152855: MS2-TRIBE evaluates both protein-RNA interactions and nuclear organization of transcription by RNA editing

GSE153746: Glioma-initiating cells at tumor edge gain signals from tumor core cells to promote their malignancy

GSE155442: Neoplastic-stromal cell crosstalk regulates matrisome expression in pancreatic cancer

GSE151375: Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors

GSE156226: Multivalent proteins rapidly and reversibly phase-separate upon osmotic cell volume change [RNA-seq]

GSE155923: Effect of BET bromodomain inhibitor and/or mTOR inhibitor on transcriptome of small cell lung cancer patient-derived xenograft LX95 tumors