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Sequencing-based assays (Page 111)

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Explore curated data sets and assays

Sequencing-based assays (Page 111)

GSE150301: Gene expression patterns of tumor-infiltrating CD8 T cells according to the CD137 expression in human metastatic ovarian cancer

GSE151723: Mapping the effects of developmental lead (Pb) exposure on the hippocampus with single cell analysis

GSE153137: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Mettl5-/- embryonic stem cells Transcriptomes

GSE137762: Cellular and molecular changes of brain metastases-associated myeloid cells during disease progression and therapeutic response

GSE147477: SWI/SNF complex mutations promote thyroid tumor progression and resistance to redifferentiation therapy (RNA-seq, Fig2)

GSE146549: Analysis of transcriptomic responses of genotoxic stress in human HepaRG hepatocarcinoma cells

GSE111009: Cell type-dependent control of enhancer and p53 transcriptional activity by p63

GSE150305: Memory-like HCV-specific CD8+ T cells retain a chronic scar after cure of chronic HCV infection

GSE143787: Differential contribution of bone marrow derived-monocytes to the lung tissue resident alveolar macrophages and persistent lung inflammation with chronic air pollution exposure

GSE152172: Maternal Oxycodone Treatment Causes Pathophysiological Changes in the Mouse Placenta

GSE146639: Bulk and single cell sequencing (bc-Smart-seq2 and 10XGenomics) of human microglia from post mortem AD CNS tissue

GSE137786 (mouse): Molecular determinants of nephron vascular specialization in the kidney

GSE137909: Characterizing pancreatic -cell heterogeneity in the streptozotocin model by single-cell transcriptomic analysis

GSE154991: Profiling primary osteoblast transcriptomes during differentiation

GSE138755: PPARaDN KP vs PPARaDN KPG1 tumours

GSE153534: Aortic smooth muscle cell phenotype modulation during Marfan syndrome aneurysm formation

GSE147832 (mouse): Cell type- and replication stage-specific influenza virus responses in vivo

GSE151741: Asymmetrically-substituted quadruplex-binding napththalene diimides showing potent activity in models for pancreatic cancer

GSE140919: Defining Murine Monocyte Differentiation into Colonic and Ileal Macrophages

GSE147449: MACE RNA Sequencing Analysis of Conjunctival Squamous Cell Carcinoma and Papilloma Using Formalin-Fixed Paraffin-Embedded Tumor Tissue

GSE146604: Next Generation Sequencing identifies differential genes regulated by FTSJ1 overexpression

GSE153152: Characterization of mature IL18R- and IL18R+ Tregs in the thymus

GSE151193: Chromatin looping links target genes with genetic risk loci for dermatological traits

GSE151334: Single cell profiling of total RNA using Smart-seq-total

GSE140903: Paternal nicotine enhances fear memory, reduces nicotine administration and alters hippocampal genetic and neural function in offspring [RNA-seq]

GSE147435: Impaired transcriptional profile in the hippocampus following loss of Kdm5a

GSE138878: Regulating lineage progression of cortical neural stem cells by extrinsic signaling molecule SHH [bulk RNA-seq]

GSE145811: Chemical genetics strategy to profile kinase target engagement reveals role of FES in neutrophil phagocytosis via SYK activation

GSE145840: Metabolic Effects of AirPollution ExposureandReversibility

GSE146687: Evaluation of Eribulin Combined with Irinotecan for Treatment of Pediatric Cancer Xenografts

GSE138006: Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation [RNA_3populations_LSK_GMP_CFUE]

GSE154304: Runx-meRunx-mediated gene regulation during thymic T cell development and stage specific genomic interactions of Runx3

GSE152981: GMM-Demux: sample demultiplexing, multiplet detection, experiment planning and novel cell type verification in single cell sequencing.

GSE137927: Single-cell mRNA analysis of colon phagocyte heterogeneity identifies two major macrophage developmental pathways

GSE146644: Gene expression profiling of the vomeronasal organs in mice selectively bred for high voluntary wheel running activity and non-selected controls

GSE147907: Anatomical locations of CD8+ memory T cells determine distinct mechanisms of reactivation II

GSE148058: An integrated multi-omics approach identifies the landscape of interferon-a-mediated responses of human pancreatic beta cells [RNA-seq 2]

GSE146619: Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity

GSE139107: Cell profiling of acute kidney injury reveals conserved cellular responses to injury

GSE147457: Single Cell RNA-Sequencing of Human Limb Skeletal Muscle across Development and Myogenic Culture from Pluripotent Stem Cells

GSE150026: Effects of Tesamorelin on Hepatic Transcriptomic Signatures in HIV-Associated NAFLD

GSE148180: RNA-seq: Analysis of differential gene expression between HD and DM1 patient lymphoblastoid cell lines (LCLs) compared to unaffected LCLs.

GSE145726: In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states (II, single-cell RNA-Seq data)

GSE154911: Host immune response against the emerging fungal pathogen Candida auris: transcriptional and functional insights

GSE146660: Uncovering Modifier Genes of X-linked Alport Syndrome Using a Novel Multi-parent Mouse Model

GSE138825: Tissue-specific transcriptomic changes associated with AmBisome treatment of mice with experimental visceral leishmaniasis

GSE138872: Transcriptomic analysis (RNAseq) of tumour-exposed Tregs from IL33 genetical deficient mice

GSE143836: Neuron-Derived Estrogen is Critical for Astrocyte Activation and Neuroprotection of the Ischemic Brain

GSE150394: A1-Reactive Astrocytes and a loss of TREM2 are associated to an early state of pathology in a mouse model of Cerebral Amyloid Angiopathy

GSE150071: Type 3 innate lymphoid cells direct goblet cell differentiation via the LT-LTR pathway during Listeria infection

GSE154340: SMALL EXTRACELLULAR VESICLE REGULATION OF MITOCHONDRIAL DYNAMICS REPROGRAMS A HYPOXIC TUMOR MICROENVIRONMENT

GSE150364: Thyroid Hormone Receptor Beta Induces a Tumor Suppressive Program in Anaplastic Thyroid Cancer

GSE146659: RNA Sequencing Facilitates Quantitative Analysis of Wild Type and FAK-/- Wnt1 driven mammary tumor cell transcriptomes

GSE139419: MEF2C hypofunction in neuronal and neuroimmune populations produces MEF2C haploinsufficiency syndrome behaviors in mice

GSE146503: Gene expression changes induced by hypomethylating agent, Azacitidine (AZA); IDH1 inhibitor, BAY1436032 (BAY) and sequential and simultaneous combination of BAY and AZA in in vitro treated human (CD45+) cells isolated from the bone marrow of IDH1mut

GSE139585: A Uromodulin mutation resulting in kidney fibrosis due to activation of the innate immune system through mononuclear phagocyte ATF4/integrated stress response signaling

GSE150365: Transcriptome analysis of C2C12 myoblasts with mutations in LMNA gene

GSE151763: A Treg cell Notch4-GDF15 Axis Licenses Tissue Inflammation in Asthma

GSE148123: Transient Nodal signalling in left precursors coordinates opposed asymmetries shaping the heart loop

GSE153491: EZH2-GATA6 axis in Pancreatic ductal adenocarcinoma [RNA-Seq]

GSE148066: Integration of Innate 1 Immune Signaling by Caspase-8-Mediated Cleavage of N4BP1 (NGS2979 RNA-seq)

GSE140838: Imprinted maternally-expressed microRNAs in induced neurons

GSE153158: RNA sequencing of NF-kB knockout (KO) U937 cells

GSE151709: Single-cell RNA sequencing of olfactory bulb dopaminergic neurons

GSE148138: Identification of gene expression changes in MEF cell lines with a targeted MDMX mutation that disrupts binding to CK1-alpha kinase

GSE146123: Dental cell type atlas reveals new stem and differentiated cell types in mouse and human teeth

GSE148050: Endogenous suppression of WNT signalling in human embryonic stem cells leads to low differentiation propensity towards definitive endoderm

GSE153198: Combinatorial transcriptional profiling of mouse and human enteric neurons identifies shared and disparate subtypes in situ [Human Enteric Ganglia]

GSE146688: Argonaute Binding within 3-Untranslated Regions Does Not Predict Gene Repression

GSE148053: Total RNA sequencing of postnatal male germ cells

GSE140135: RNAseq for Nestin+ bone marrow stromal cells in normal and MLL-AF9 mice

GSE153226: Transcriptional profiling for lung tissue-resident helper T cell and spleen follicular T cells

GSE146629: Role of Rnf40-dependent histone monoubiquitination in peripheral nervous system myelination [RNA-Seq]

GSE150096: Gene expression profiles of primary LN3 T-ALL cells and wild-type T-lineage cells from the thymus and spleen

GSE148149: RNA sequencing of visceral fat tissue and E0771 tumor tissue harvested from WT and fat specific PD-L1 KO host

GSE154261: Identification of Differential Tumor Subtypes of T1 Bladder Cancer

GSE146673: Mutant huntingtin stalls ribosomes and represses protein synthesis independent of Fragile X mental retardation protein [RNA-seq]

GSE154961: ZNF410 uniquely activates the NuRD component CHD4 to silence fetal hemoglobin expression [RNA-Seq]