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Sequencing-based assays (Page 104)

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Explore curated data sets and assays

Sequencing-based assays (Page 104)

GSE133260: miR206 family is important for mitochondrial and muscle function, but not essential for myogenesis in vitro [RNA-Seq]

GSE143505: mRNA sequencing of human colorectal cancer organoids

GSE141645: Symmetric arginine dimethylation is selectively required for mRNA splicing and the initiation of type I and type III interferon signaling

GSE141666: RNA-seq of H1299 cells in which either PRKCI or SOX2 was silenced by validated lentiviral shRNA constructs

GSE153923: The effects of liraglutide and dapagliflozin on cardiac function and structure in a multi-hit mouse model of Heart Failure with Preserved Ejection Fraction

GSE154829: Placental Genomic and Epigenomic Signatures in Infants Borns at Extremely Low Gestational Age

GSE141940: RNA-seq analysis of mouse cardiomyocytes at postnatal day 6 (P6) and P30

GSE142085: Cell type specificity of intralocus interactions reveals oligodendrocyte intrinsic mechanisms for multiple sclerosis [RNA-Seq]

GSE142152: RNA sequencing analysis revealed a distinct motor cortex transcriptome in spontaneously-recovered mice after stroke

GSE145905: PD-L1 Engagement on T cells Promotes Self-tolerance and Suppression of Neighboring Macrophages and Effector T cells in Cancer

GSE136866: Sestrin prevents skeletal muscle atrophy

GSE145601: RNA-seq of rd1 retinal microglia after treatment with AAV8-GFP vs. AAV8-GFP + AAV8-TGFB1

GSE135075: FUS-mediated dysregulation of Sema5a, an autism-related gene, in FUS mice with hippocampus-dependent cognitive deficits

GSE141685: Transcriptomic profiling ofLung adenocarcinoma brain metastasis

GSE142066: Mouse brain transcriptome responses to inhaled nanoparticulate matter differed by sex and APOE in Nrf2-Nfkb interactions

GSE142124: Identifying and overcoming a mechanism of resistance to Wee1 kinase inhibitor AZD1775 in high grade serous ovarian cancer cells (ES-2)

GSE134235: Mutant Kras co-opts a progenitor-derived enhancer network to initiate pancreatic tumorigenesis [RNA-seq]

GSE128647: An intramolecular salt bridge linking TDP43s RNA recognition motifs dictates RNA binding, protein stability and TDP43-dependent neurodegeneration

GSE141675: RNA-seq analysis of human WI-38 fibroblast cell line treated with a chalcone that promotes resistance to oxidative stress

GSE142067: Gene expression of Abhd11 knock-out or over-expression embryonic stem cells

GSE145359: SIRT3, a therapeutic target in DLBCL

GSE142073: Long-term exposure of early-transformed human mammary cells to low-doses of Benzo[a]pyrene and/or Bisphenol-A enhances their cancerous phenotype via an AhR/GPR30 interplay

GSE152298: Addressing the essential role of cohesin STAG2 in embryos and adult mice

GSE142083: Transcriptome sequencing of laryngeal squamous cell carcinoma and paired adjacent normal mucosa tissues

GSE145291: Identification of endothelial derived factors that promote metastasis II

GSE142103: Complete loss of H3K9 methylation dissolves mouse heterochromatin organization [RNA-seq]

GSE149100: Transcriptomic comparison of young and aged choroid at the bulk and single-cell levels (single cells)

GSE143279: TGF-beta-activated cancer-associated fibroblasts limit cetuximab efficacy in preclinical models of head and neck cancer

GSE142131: Genome wide RNA-sequencing of human pluripotent stem-cell derived endothelial cells 48h after transduction with adenoviruses expressing either empty vector of different combination of transcription factors

GSE134234: RIPK3 activation leads to cytokine synthesis that continues after loss of cell membrane integrity

GSE143282: Profiling astrocyte spatial heterogeneity and region-specific transcription factor networks

GSE144285: Targeting transcription-replication conflicts is an effective therapeutic principle for MYCN-driven neuroblastoma [RNA-seq mouse GB]

GSE142151: Chromatin states and transcriptome of CD8+ T cells over the course of differentiation

GSE156799: Compartment-specific transcriptomics of ozone-exposed murine lungs reveal sex- and cell type- associated perturbations relevant to mucoinflammatory lung diseases

GSE142125: Inhibition of BRD4 Partially Rescues Dilated Cardiomyopathy and Cardiac Arrhythmias in Myocyte-Specific Lamin A/C Null Mice [RNA-Seq]

GSE143534: Fluoride alters Ca2+ signaling and mitochondrial function in enamel cells [Human]

GSE149126: RNAseq data comparing KRAS*-independent HDAC5 eccaper PDAC cells and KRAS*-dependent iKPC PDAC cells

GSE136896: Identification of transcripts regulated in the HN4 cells incubated with NGF

GSE141689: LTi-like cells in the gut, mLN and spleen

GSE135018: Bhlhe40 and Bhlhe41 transcription factors regulate alveolar macrophage self-renewal and identity

GSE145293: Identification of endothelial derived factors that promote metastasis I

GSE141678: Transcriptomic analysis of the effect of iron overload in human iPSC-CMs

GSE142538: Analyzing Presymptomatic Tissue to Gain Insights into Late-Onset Degenerative Trinucleotide Repeat Disease

GSE152421: Episignatures stratifying ADNP syndrome show modest correlation with phenotype [RNA-seq]

GSE145308: Pooled CRISPR screens in human intestinal organoids [RNA-seq]

GSE142586: RNA sequencing data of paired parental and therapy resistant cancer cell lines transfected with negative control siRNA's or a pool of siRNA's targeting DNMT1, DNMT3A and DNMT3B

GSE147642: Oncogenic ALKF1174L drives tumorigenesis in cutaneous squamous cell carcinoma

GSE142556: The oncogenomic function of androgen receptor in esophageal squamous cell carcinoma is directed by GATA3

GSE134249: Erk1/2 mediated negative feedback regulation is essential for postnatal intestinal development and homeostasis

GSE143581: P53 dynamics vary between tissues and are linked with radiation sensitivity

GSE144093: RNA-seq analysis of transcriptomes in control and LAMP2A-overexpressed D3 ES cells

GSE148650: Next Generation Sequencing Facilitates Quantitative Analysis of mock oligodendrocytes (Ols) and tdTomato+ and tdTomato- Ols Transcriptomes.

GSE136405: Gene expression changes following Knock-down of eRNA_06347 in post-stroke mouse cortex

GSE144115: Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells [RNA-seq]

GSE148703: Corneal tissue induces transcription of metallothioneins in monocyte-derived human macrophages

GSE142600: Global translation during early development depends on the essential transcription factor PRDM10 [RNA-Seq_2]

GSE140125: DeepH&M: Simultaneous determination of single-CpG hydroxymethylation and methylation levels from enrichment and restriction enzyme sequencing methods

GSE156687: Nrg1/ErbB4 signaling contributes to the effects of the ketogenic diet on GABAergic activity and seizures

GSE140482 (mouse): Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation (RNA-seq)

GSE148689: Transcriptomal profiling of early and late response of cells to cell penetrating peptides

GSE144596: RNA extracted from the left ventricle of 3 different mouse heart disease models, wild type, mdx, and mdx sln+/- hearts

GSE145287: Transcriptomes of mesenteric lymph node WT and Tph1-deficient ILC2s

GSE141990: Identifying and overcoming a mechanism of resistance to Wee1 kinase inhibitor AZD1775 in high grade serous ovarian cancer cells (OVCAR8)

GSE142612: mRNAseq in SBMA and control iPSC-derived motor neurons

GSE142809: CRISPRi screen of prostate cancer associated risk cis-regulatory elements [RNA-seq]

GSE133369: Hippocampal transcriptome analysis following maternal separation in a mouse model of fetal alcohol spectrum disorder

GSE143535: Fluoride alters Ca2+ signaling and mitochondrial function in enamel cells [Mouse]

GSE142005: Pre-established chromatin interactions mediate acute transcriptional response to Epo [RNA-seq]

GSE152327: Fluvastatin-perturbed RNA expression in two t(4;14)-positive multiple myeloma cell lines

GSE143586: Ectopic Osx+ Cells Affect Tumor Growth

GSE144052: Understanding Heterogeneity of Fetal Hemoglobin Induction through Comparative Analysis of F- and A-erythroblasts

GSE142590: Transcriptomic signature of spinal cord from CHMP2Bintron5 mice

GSE134462: In vivo protein complementation demonstrates direct detection of presynaptic -synuclein oligomerization and age-dependent accumulation of 8-16mer oligomer species

GSE143598: Inhibiting neuroinflammatory reactive astrocytes slows disease progression in a mouse model of ALS

GSE134276: Gastrointestinal tissue-specific chromatin accessibility and gene expression during development (RNA-Seq)

GSE141721: Transcriptionnal coregulator GRIP1 differentially modulate myeloid cell-driven neuroinflammation and response to IFN-beta therapy

GSE148641: Hypothalamic REV-ERBs Control Circadian Food Intake and Leptin Sensitivity [RNA-seq]

GSE144008: Genome wide gene-expression and mRNA splicing profile in human cardiomyocytes differentiated from Wt and QKI mutant embryonic stem cells

GSE149126: RNAseq data comparing KRAS-independent HDAC5 eccaper PDAC cells and KRAS-dependent iKPC PDAC cells