PLX203936

GSE61209: RNA-seq profiling of transcriptomes of control and Hif1a mutant E12.5 hearts

Organsim mouse
Type RNASEQ
Target gene
Project ARCHS4

Purpose: to identify genes aberrantly expressed upon myocardial ablation of Hif1a; Methods: a floxed Hif1a allele was deleted in mouse embryonic hearts using a NXK2.5Cre line. Total RNA was extracted from E12.5 hearts (n=3 for controls and mutants) usinz Trizol and processed for RNA-seq. Reads were mapped to Mm10 reference genome using TopHat2 and Bowtie2. Transcript expression values were determined after transcript normalization with AltAnalyze; Results: this analysis revealed a total of 1451 genes significantely (|Fold| > 20% and P<0.05) modulated in Hif1a cKO hearts SOURCE: Alexander,C,ZambonZambon Keck Graduate Institute

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