PLX098284

GSE139324: Immune landscape of viral- and carcinogen-drived head and neck cancer

• Organsim human
• Type RNASEQ
• Target gene
• Project ARCHS4

Head and neck squamous cell carcinoma (HNSCC) arises through exposure to environmental carcinogens or malignant transformation by human papillomavirus (HPV). Here, we assessed the transcriptional profiles of 131,224 single cells from peripheral and intra-tumoral CD45+ immune populations from HPV and HPV+ HNSCC and healthy donors. A spectrum of transcriptional signatures in immune lineages ranging from similar to highly divergent was present in the tumor microenvironments (TME) in HPV and HPV+ HNSCC. CD8+ and regulatory CD4+ T cells were similar in HPV and HPV+ HNSCC, compared to significant differences between helper CD4+ T cells, B cells and myeloid cells. Further dissection of the major immune lineages identified unique cell states and differentiation trajectories. We contextualized our results by performing multispectral immunofluorescence and evaluating putative cell-cell communication based on spatial proximity, and found longer progression free survival in patients with enrichment of a CD4+ T follicular helper cell signature. SOURCE: Anthony,Richard,Cillo (arc85@pitt.edu) - Vignali Lab University of Pittsburgh