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Sequencing-based assays (Page 86)

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Explore curated data sets and assays

Sequencing-based assays (Page 86)

GSE128870: Transcriptional profiling of the peri-pulmonary vein region of the adult mouse left atrium and corresponding Tbx5-dependence

GSE129106: Intraductal Adaptation of the 4T1 Mouse Model of Breast Cancer Reveals Effects of the Epithelial Microenvironment on Tumor Progression and Metastasis

GSE129180: ZIKV infection strongly induces antiviral immune responses in human NPCs

GSE142422: Dosage dependent requirements of Magoh for cortical interneuron generation and survival

GSE130343: Gata2 deficiency delays leukemogenesis while contributes to aggressive leukemia phenotype in Cbfb-MYH11 knockin mice

GSE129210: TNF promotes SREBP activity to regulate macrophage polarization and tissue repair [RNA-seq]

GSE123136: SUFU and SPOP mediated downregulation of Hh signaling promotes pancreatic beta-cell differentiation through the regulation of organ-specific stromal niche signals

GSE131792: Inhibition of Lysine-Specific Demethylase-1 in Myelodysplastic Syndrome Progenitors Restores Differentiation of CD141Hi Conventional Dendritic Cells

GSE123916: TP53/DNA Damage Response Pathway is Activated and Contributes to the Pathogenesis of Dilated Cardiomyopathy Caused by Lamin A/C Mutations

GSE129172: Setdb1 safeguards genome stability against stem cell necroptosis and bowel inflammation (RNA-seq)

GSE125242: Transcriptome Sequencing Facilitates Quantitative Analysis of BMDM (bone marrow induced macrophages) from FBXW7f/f and LysM-cre FBXW7f/f Transcriptomes before or after LPS treatment

GSE131786: Transcriptional analysis of IGF1 treatment of mouse tenocytes over a 24 hour time course

GSE129228: Effects of exosomes derived from mice endothelial progenitor cells (EPCs-exo) on mice fibroblast following inducement of dexamethasone

GSE129388: Tissue specific innate lymphoid cells promote checkpoint blockade PD-1 immunotherapy in pancreatic cancer

GSE122072: Shortening the half-life of Cas9 maintains its gene editing ability and reduces neuronal toxicity

GSE124532: Transcriptome and DNA methylome of mouse Mller glia

GSE128740: Alterations of the MEK/ERK, BMP, and Wnt/b-catenin pathways detected in the blood of individuals with lymphatic malformations

GSE128891: Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (Bulk RNA-seq)

GSE129103: Gene expression differences between activated B cells expressing GL7 and not in Peyers patches

GSE123941: Loss of non-CpG methylation in inhibitory neurons impairs neural function through a mechanism that partially overlaps with Rett syndrome

GSE127898: Transcriptome map of the human brain at the single-cell resolution

GSE130770: Identification of trans regulators of ADAR and A-to-I RNA editing using RNA-seq

GSE128893: SirT7 auto-ADPribosylation regulates glucose starvation response through macroH2A1.1 (RNA-seq)

GSE129096: Systematic comparison of single-cell and single-nucleus transcriptomes during cardiomyocyte differentiation

GSE122871: Single-cell Transcriptomics Resolves Intermediate Glial Progenitors and Uncovers a Pivotal Determinant of Cell Fate and Gliomagenesis

GSE142475: Genes regulated by COUP-TFII inhibitor

GSE136029: The effect of attenuated Salmonella typhimurium on the tumor epithelium in mouse colorectal cancer model

GSE130595: Effect of ILF3 depletion in HeLa cells on RNA steady state levels

GSE132289 (mouse): Mouse ovarian cancer models recapitulate the human tumor microenvironment and patient response to treatment

GSE140062: Effect of overexpression on miR-486-5p in Healthy doncor CD34+ cells

GSE138531: Aortic Valve Tissue: Stenosis vs. Sclerosis

GSE121887: Mouse Genome-Wide Association and Systems Genetics Identifies Lipoma HMGIC Fusion Partner (Lhfp) as a Regulator of Bone Mass

GSE127918: Reconstruction of the decidual pathway in human endometrial cells using single-cell RNA-Seq

GSE128751: Global transcriptomic analysis of murine ovarian surface epithelial (MOSE) cells with PAX8 overexpression

GSE138603: Response of expanded human conventional and regulatory T cells to CD3/CD28-mediated activation [Exp1]

GSE137646: TET1 is a tumour suppressor that inhibits bladder cancer progression

GSE127862: ER over-expression does not accelerate development of p53-deficient mammary tumors in mice [RNA-Seq]

GSE140059: Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Otud1-/- distal colonic tumor Transcriptomes

GSE128759: Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (RNA-seq)

GSE133660: Gene expression data from IMR90 control, IMR90 shRRM2 and shRRM2/shp16

GSE128532: Genome wide RNA sequencing to profile response to IL-1 in control and IFT88 depleted cells

GSE130822: Ascl2-dependent cell differentiation drives regeneration of abated intestinal stem cells

GSE123126: Mutationally-activated PI3-kinase-a promotes de-differentiation of lung tumors initiated by the BRAFV600E oncoprotein kinase

GSE130289: Dynamics of Trophoblast Differentiation in Peri-implantation Stage Human Embryos

GSE134048: HEK293 TFAM Knockout Expression Study

GSE133693: Myocardial RNA Sequence Analyses throughout the Course of Mouse Cardiac Laminopathy Identify Differential Expressions of the Key Genes for Cell Cycle Control and Mitochondrial Function

GSE124312: An atlas of vagal sensory neurons and their molecular specialization

GSE127995: Sensory experience remodels genome architecture in neural circuit to drive motor learning

GSE129882: RNA-seq transcript and gene data on zika exposed and zika nave samples

GSE122235: Role of CIZ1 in maintenance of epigenetic landscape in primary differentiated mouse embryonic fibroblasts

GSE123735: Next Generation Sequencing Facilitates Quantitative Analysis of the effects of DTA-1 treatment on sorted mouse adipose tissue ILC2 Transcriptomes

GSE130306: DNMT1 drives 4D genome rewiring during oncogene induced senescence

GSE130187: High-throughput exploration of the network dependent on AKT1 in mouse ovarian granulosa cells.

GSE130897: The RNA hairpin binder TRIM71 modulates alternative splicing by repressing Mbnl1 [RNA-seq]

GSE120429: AMPK activation protects against diet induced obesity through Ucp1-independent thermogenesis in subcutaneous white adipose

GSE132270: Gene expression profiles of macrophage and multinucleated cells programmed by IL15

GSE131856: Nuclear receptor ROR is a targetable master regulator of cholesterol in a subtype of breast cancer [RNA-Seq]

GSE128742: Total RNA sequence under control and PD-L1 knockdown

GSE120701: Developmentally controlled expression of Cxcr4 by hematopoietic progenitors allows tracing of monocyte function in stroke

GSE132596: Loss of TET2 results in gene expression represssion in mouse nave B-cells and lymphoma cells [RNA-seq]

GSE131826: RNA-binding Protein PCBP1/hnRNP E1 is an Intracellular Checkpoint for Balancing Effector versus Regulatory T Cells

GSE131861: RNA-seq Analysis of Gs-linked GPCRs expressed in mouse inguinal white adipocytes (iWAT), epididymal white adipocytes (eWAT) and brown adipose tissues (BAT)

GSE128743: EBF-1 mutant bone marrow stroma confers long-term changes in hematopoietic stem cell potential

GSE130242: Inhibition of protein arginine methylation alters RNA metabolism and DNA damage response providing a new therapeutic strategy in PDAC

GSE87641: Adaptive resistance of melanoma cells to RAF inhibition via reversible induction of a slowly-dividing de-differentiated state

GSE135220: Human cell line and subcutaneous tumor

GSE129726: Hematopoietic stem cells in perisinusoidal niches are protected from ageing [young and aged BM CD45-CD31+ endothelial cells]

GSE130353: Transcriptome analysis of circulating monocytes in QFS and CFS compared to various control groups

GSE134843: RNA seq analysis of SHP099 treated Leukemic Cells Expressing Genetic and Epigenetic Mutations

GSE130201: RNA-seq and ATAC-seq to study dendritic cell heterogeneity

GSE131874: Sexually dimorphic crosstalk at the maternal-fetal interface

GSE127465: Single cell transcriptomics of human and mouse lung cancers reveals conserved myeloid populations across individuals and species

GSE133799: Symmetric neural progenitor divisions require chromatin-mediated homologous recombination DNA repair by Ino80 [RNA-seq]

GSE134020: Mammalian RNA decay pathways are highly specialized and widely linked to translation

GSE130613: The effect of acute sustained hypoxia on gene expression in liver, kidney and lung on different times-of-day

GSE128066 (mouse): A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

GSE131858: Low input RNA sequencing of GPR35-positive and negative intestinal macrophages

GSE130356: BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [RNA-Seq]