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Sequencing-based assays (Page 8)

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Explore curated data sets and assays

Sequencing-based assays (Page 8)

GSE77188: Next generation sequencing based analysis of the embryonic (E15.5) transcriptome of wild type and 1-integrin-cKO lenses

GSE81506: RNA-seq analysis of cultured neural stem cells (NSC) isolated from the subventricular zone and transformed lines GSC1 and GSC2 derived from these cells

GSE73541: Neutrophils oppose uterine epithelial carcinogenesis via debridement of hypoxic tumor cells

GSE92274 (human): Comparative Transcriptomic Analysis of Hematopoietic System Across Species by Microwell-Seq

GSE89574: Cbx3 Maintains Lineage Specificity During Neural Differentiation [RNA-seq]

GSE76309: Comparison of gender-biased liver gene expression from transgenic mice with chronic IFN gamma expression

GSE73631: A XEN-like state bridges somatic cells to pluripotency during chemical reprogramming

GSE70605: Single Cell Sequencing Identifies Key Epigenetic Regulators in Nuclear Transfer Mediated Reprogramming [RNA-seq]

GSE74161: Dnmt3a regulates myeloproliferation and liver-specific homing and expansion of hematopoietic stem and progenitor cells (RNA-Seq)

GSE113754: RNA-Seq analysis of Sleep deprivation in wildtype and Shank3 mutant mice

GSE131126: RNA-seq in pancreatic cancer PANC1 cells

GSE75066: Genome-wide analysis of mitosis, early G1, late G1 and G2 in mouse pluripotent cells

GSE77891: RNA-SEQ analysis of E18.5 ALL Ret-positive (EGFP-labeled) male or female dorsal root ganglia neurons.

GSE71744: Lineage-specific functions of TET1 in the post-implantation mouse embryo

GSE74138: RNA-Seq analysis of 3 month old all Ret-positive (EGFP-labeled) dorsal root ganglia L345 or L6S1 neurons

GSE76125: Effect of mitochondria deficiency on senescence-associated gene expression

GSE75997: Gene expression changes upon Mll1 knockout in NUP98-HOXA9 transformed murine LSKs

GSE133831: Whole transcriptome analysis of human kidney cells after exposure to Ochratoxin A

GSE75778: Cerebellar RNA-Seq from ATXN1 Transgenic Mice Reveals SCA1 Disease Progression and Protection Pathways

GSE79661: Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a

GSE77292: Ribosomal footprinting of CN34-Parental and CN34-LM1a

GSE77893: RNA-SEQ analysis of postnatal Ret-positive (EGFP-labeled) nociceptive (NaV1.8 population) dorsal root ganglia L345 or L6S1 neurons.

GSE113688: JunB defines functional and structural integrity of the epidermo-pilosebaceous unit in the skin

GSE94078: Gene expression profiling of LSKSLAM cells in mice deficient for cholinergic fibers

GSE75616: Temporal transcriptome analysis of control and Zeb2 knockout mESC in pluripotency and in neural differentiation

GSE131834: Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis

GSE77513: Capturing the biology of mild versus severe disease in a pluripotent stem cell-based model of Familial Dysautonomia

GSE135312: RNA-seq analysis of CRISPR/Cas9 generated human BMPR2 deficient endothelial cell lines harboring mutations characteristic for hereditary pulmonary hypertension (HPAH)

GSE113719: Transcriptional respose to Wnt activation regulates the regenerative capacity of the murine postnatal cochlea

GSE81575: Next Generation Sequencing of 23116 MT (low Arid1a expression) vs AB-C1 and AB-C2 (high Arid1a expression) Transcriptomes

GSE83358: FOXP1-SHQ1 deletion cooperates with PTEN deletion in oncogenesis

GSE86549: Two functionally distinct human Pan3 isoforms regulate mRNA turnover across the transcriptome

GSE76931: The RNA binding protein IGF2BP3 promotes hematopoietic progenitor cell proliferation by targeting leukemogenic pathways

GSE76093: RNAseq analysis of two independent stains of C57BL/6J-Plat-/- mice and wild-type C57BL/6J.

GSE77315: Ribosomal footprinting of MDA-Parental and MDA-LM2

GSE129788: Single-cell transcriptomic profiling of the aging mouse brain

GSE76498: KPC vs Wild Type Pancreatic Fibroblasts

GSE73562: Gene expression analysis to identify target genes activated after preBCR signaling

GSE90019: Analysis of transcriptional and epigentic changes induced by loss of Phf8 [RNA-seq]

GSE76626: Characterization of EZH2-deficient human embryonic stem cells [ChIP-seq and bulk RNA-seq]

GSE81579: Transcriptome analysis of human cumulus cells reveals hypoxia as the main determinant of follicular senescence.

GSE81257: Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [RNA-seq]

GSE90053 (mouse): Species-Specific Developmental Timing is Maintained by Pluripotent Stem Cells Ex Utero

GSE86590: A BAT-enriched RNA binding protein, Ybx2, regulates cold-induced brown fat activation by stabilizing Pgc1 mRNA

GSE72238: Genome-wide H2B monoubiquitination regulates gene expression by coordinating H3K4me3 and H3K27me3 [RNA-Seq Data Set]

GSE81576: Gene expression profiling of Eed knockout and Ezh2 knockout small intestinal crypts [RNA-seq]

GSE73503: Transcriptome profiling in knock-in mouse models of Huntington's disease [Hippocampus_mRNA]

GSE76711: Stromal cells secrete exosomes carrying specific molecular signature involved in the support of Hematopoietic Stem and Progenitor Cells

GSE77374: RNA-seq data from murine eGFP+ relbfl/flnfkb2fl/flCg1-Cre and Cg1-Cre splenic germinal center B cells purified by fluorescent activated cell sorting.

GSE72590: Transcriptomic characterization of the impact of 2'-fucosyllactose supplementation on intestinal adaptation following ileocecal resection.

GSE77569: RNA-sequencing reveals transcriptional up-regulation of Trem2 in response to bexarotene treatment

GSE76733: Genome-wide profiling of 2 month vs >6 month old muscle Treg cells

GSE77003: Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Embryonic Stem Cells (RNA-seq)

GSE74679: Analysis of transcriptome changes in Kmt2d deletion in cardiac mesoderm, anterior heart field precursors and cardiomyocytes

GSE88949: Effects of NIK activation on the self-renewal of hematopoietic stem cells

GSE98274: RNA-Seq of SHEP TET21N cells upon Doxorubicin treatment

GSE142603: Lack of RAN-mediated toxicity in Huntingtons disease knock-in mice

GSE71734: RNA-seq data of intestinal epithelial cells

GSE70249: Identification of chemicals that mimic transcriptional changes associated with autism, brain aging and neurodegeneration

GSE76487: MBNL1-dependent modulation of gene expression in MDA-MB-231 breast cancer cells

GSE77007: Quantitative Analysis of mRNA expression in calvaria tissue from control and Med23-/- vs. wild type and Runx2+/- mice through Next Generation Sequencing

GSE76483: Simultaneous profiling of transcriptome and DNA methylome from a single cell

GSE77462: Searching for target genes of miR-508/509/506/514 in HCT116 cells

GSE79814: Epigenetic Plasticity Drives Adipogenic and Osteogenic Differentiation of Marrow-Derived Mesenchymal Stem Cells (RNA-seq)

GSE126446: Transcriptome analysis of reticulated platelets reveals a prothrombotic profile [mRNA-Seq]

GSE72550: Epigenomic Landscapes of Retinal Rods and Cones

GSE79209: Airway epithelial cells from smokers with and without bronchial premalignant lesions

GSE74724: Translational profiling identifies a cascade of damage initiated in motor neurons and spreading to glia in mutant SOD1-mediated ALS

GSE79374: Single-cell RNAseq of mouse brain tissues across 3 developmental time points

GSE76682: RNA-seq expression data from EB-HSPC after AM580 treatment compated to DMSO-trated and FL-HSPCs

GSE79791: BMP (Bone morphogenetic protein) signaling network regulates mesenchymal stem cell lineage commitment during tooth development

GSE78272: Transcriptome profiling in knock-in mouse models of Huntington's disease (cortex_mRNA).

GSE78271: RNA-SEQ assay for wild type and CRISPR induced endoglin knockout human pulmonary artery smooth muscle cells (PASMC)

GSE79210: Airway epithelial cells from high-risk subjects obtained via multiple bronchoscopy procedures to follow bronchial premalignant lesions as part of lung cancer screening

GSE76017: Transcriptomic profiling of alpha, beta, and delta cell populations provides new insights into the role of ghrelin in the pancreas

GSE77514: RNA sequencing identifies differentially expressed genes in embryonic cardiomyocytes following knockdown of DNMT3a or DNMT3b expression

GSE71802: RNA-Seq: assessment of transcript level analysis tools [seq]

GSE79824: Transcriptome analysis of Shank2 mutant mice