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Sequencing-based assays (Page 33)

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Explore curated data sets and assays

Sequencing-based assays (Page 33)

GSE99675: CDK4/6 inhibitor resistance in prostate cancer

GSE65924: Stereo-sequencing: 3D Transcriptome of the mouse embryo at gastrulation

GSE71281: An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses II [RNA-Seq]

GSE138614: Next-generation sequencing study in multiple sclerosis white matter brain lesions

GSE65665: Gene expression profiling of effect of Yap inhibition in a genetically engineered mouse model of hepatocellular carcinoma

GSE66551: Nuclear orphan receptor TLX affects gene expression in pancreatic beta cells

GSE124794: Whole-transcriptome profiling of LCMV.GP66-77 specific CD4 T cells isolated from bone marrow (BM) and spleen, 60 days after last immunization [RNA-seq]

GSE65770: Transcriptome profiling in knock-in mouse models of Huntington's disease [Cortex_mRNA]

GSE115059: Transcriptomic analysis of the role of the integrin a6b4 in detached cells

GSE74957: Graded Foxo1 Activity in Tregs Differentiates Tumor Immunity from Spontaenous Autoimmunity

GSE61716: Transcriptional perturbations by long noncoding RNAs with distinct spatio-temporal expression in the mammalian brain

GSE65943: A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells [RNA-seq]

GSE65884: PDGFR+ cells in ESC cultures represent the in vitro equivalent of the pre-implantation primitive endoderm precursors

GSE66962: Effect of OVO-like 1 knockdown on global transcript expression in differentiated BeWo trophoblast cells

GSE66014: Global Gene Expression analysis of CUTLL1 cell lines after treatment with Perhexiline

GSE65651: Gene expression profiling of wildtype vs. transgenic mice expressing the cardiac specific genetically encoded FRET biosensor Epac1-PLN

GSE65796: Multiple Arkadia/RNF111 structures coordinate its Polycomb body association and transcriptional control

GSE65868: GBM microglia

GSE65621 (mouse): Asymmetry of STAT action in driving IL-27 and IL-6 transcriptional outputs and cytokine specificity

GSE119780: RNA-Seq Analysis of TCDD-Elicited Changes in Circadian Hepatic Gene Expression in Male Mice

GSE131880: Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer

GSE68219: MYC is a major determinant of mitotic cell fate

GSE71165: Splenic bridging channel dendritic cells survey red blood cells for missing self-CD47

GSE65315: Brg1 promotes both tumor suppressive and oncogenic activities at distinct stages of Pancreatic cancer formation

GSE65774: Transcriptome profiling in knock-in mouse models of Huntington's disease [Striatum_mRNA]

GSE65887: hnRNPK is involved in mRNA processing of a significant fraction of the transcriptome

GSE65950: Effects of selection for ethanol preference on gene expression (RNA-Seq) in the nucleus accumbens shell of HS-CC mice

GSE65775: Transcriptome profiling in knock-in mouse models of Huntington's disease [AllelicSeries_6month_TissueSurvey_mRNA]

GSE66049: Maternal DNA methylation regulates early trophoblast development

GSE63340: Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment [RNA-seq]

GSE66301: Gene expression profiling of patient's DCIS-IDC tandem lesions by RNA sequencing analysis

GSE65955: Tet1 is a tumor suppressor of hematopoietic maligancy [RNA-Seq]

GSE67404: Foxc1 reinforces quiescence in hair follicle stem cells

GSE81236: MicroRNA-28 replacement for non-Hodgkin lymphoma therapy

GSE63889: H3K18Ac and H3K18Cr ChIP-seq and RNA-seq analysis of LPS-stimulated RAW 264.7 cells

GSE114374: Composition of the Colonic Mesenchyme and the Nature of its Plasticity in Inflammatory Bowel Disease

GSE66630: Transcriptome dynamics during the development of heart failure caused by mitochondrial complex I dysfunction and pressure overload

GSE70466: Replicated transcriptome profiling of Normal and Cancerous Prostate Cells [RNA-Seq]

GSE156790: Genome-wide transcriptomic analysis of MRTF-active subpopulations in nave human basal cell carcinoma

GSE65922: Neonatal nave CD8+ T cells have effector-like gene expression that prevents memory cell formation [RNA-seq]

GSE62292: mRNA profiling of Col4a3-Knockout Alport Syndrome mouse model treated with inhibitor of miR-21 at 9 weeks of age

GSE67688: Transcriptomic analysis of vulvovaginal candidiasis identifies a role for the NLRP3 inflammasome

GSE69285: Histone H3K36M mutation impairs mesenchymal differentiation and drives sarcoma development [RNA_H33_K36M_HMT]

GSE138002: scRNA-seq of the developing human retina

GSE68938: RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships (RNA-seq)

GSE70132: BMP signaling differentially regulates distinct hematopoietic stem cell types

GSE70484: Noncanonical Genomic Imprinting Effects In Offspring

GSE139822: RNA-seq data of small cell carcinoma of the bladder (SCCB) /urothelial carcinoma (Non-SCCB) clinical samples, and bladder-PARCB cell lines

GSE62710: Commensal microbiota constantly control maturation and function of microglia in the central nervous system

GSE136923: RNA-seq data from Cdk8/ and wildtype BCR-ABL1p185+ transformed bone marrow cell lines either untreated or treated with SenexinB (4 biological replicates each)

GSE66634: Alteration in the transcriptome of the lung during TGF-induced pulmonary fibrosis

GSE98856: N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis

GSE67355: A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation [RNA-Seq]

GSE67009: ESRP2 Regulates A Conserved And Cell-Type-Specific Splicing Program to Support Postnatal Liver Maturation

GSE70437: The acute cold response of brown adipose tissue analyzed by RNA-seq

GSE111950: Effect of mutant TRP53 proteins on nutlin-3a treated mouse lymphoma cell lines (RNA-seq)

GSE93309: Prmt1-mediated translation regulation is a crucial vulnerability of cancer

GSE130657: Expression profiling by high throughput sequencing of THP-1 cells treated with Monensin

GSE68715: Global transcriptional analysis of mouse fibroblasts, chemically-induced neurons (neuron-like cells) from mouse fibroblasts and mouse primary cortical neurons by RNA-seq

GSE70355: Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development

GSE148476: Transcriptome analysis of purified T cells from chronic lymphocytic leukemia patients treated with avadomide alone or in combination with immune checkpoint blocking antibodies

GSE73082: Determination of the Sp5 regulated transcriptome in differentiating ES cells

GSE111911: RNA-seq analysis of splenic follicular IgD low and IgD high, and marginal zone B cells

GSE141746: RNA-sequencing

GSE102348: High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Nave Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems [RNA-Seq]

GSE65531: Analysis of bacterial and macrophage transcripts in ISRE-positive and negative infected macrophages

GSE136632: Transcriptome of diurnal human blood neutrophils

GSE66686: De novo Reconstruction of Adipose Tissue Transcriptomes Reveals Novel Long Non-coding RNAs that Regulate Brown Adipocyte Development

GSE105451: TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing [validation in cell lines; Figure 2 and Figure S3]

GSE103870: RNA-Seq of in vitro Beta-Catenin-Stabilized Mouse Dermal Fibroblasts

GSE67113: MicroRNA-146a modulates B-cell oncogenesis by regulating EGR1

GSE69733: Knockdown of SR protein family in P19 cells and RNA-seq of cytoplasmic and whole cell polyA+ RNA

GSE101754: Exploring the gene expression profile upon FXR1 knockdown in H358 cells using RNA-seq

GSE115141: Ongoing classical IL-6 signaling is required to maintain a pathogenic Th17 response in vivo

GSE67525: Molecular anatomy of palate development

GSE130642: Transcriptomic analysis of hepatic genes in high-fat diet treated wild type and Sesn3 knockout mice

GSE73114: RNA-sequencing analysis of human fibrolamellar hepatocellular carcinoma and 4 maturational stages of the human hepatobiliary system

GSE135594: Transcriptomic profiling of nave and memory phenotype CD8 T cells in Dock2-deficient mice