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Sequencing-based assays (Page 101)

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Explore curated data sets and assays

Sequencing-based assays (Page 101)

GSE139003: RNA-seq timecourse of p53 activation with Nutlin-3a in IMR90 cells

GSE141280: SE-driven metabolic reprogramming in ADPKD (RNA-Seq)

GSE149123: RNAseq for perigonadal WAT of adipose tissue specific CDK7 knockout mice under CL or saline treatment for 7 days.

GSE138984: Quantitative analysis of transcriptomes in irradiated/unirradiated pancreatic cancer cells

GSE141328: Serine-threonine Kinase, ROCK2, Regulates Germinal Center B Cell Positioning and Cholesterol Biosynthesis

GSE155626: Effects of TNFR1 deletion on Il10-/- mouse colitis in early life

GSE101743: LncRNA NMR knockdown and overexpression in esophageal squamous cell carcinoma cell lines

GSE152165: Rapamycin and dexamethasone during pregnancy prevents tuberous sclerosis complex associated cystic kidney disease

GSE139010: CircRNA analysis in depolarized neuroblastoma cells

GSE140964: Pharmacological target focused transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia

GSE149099: Transcriptomic comparison of young and aged choroid at the bulk and single-cell levels (bulk)

GSE132148: Gene expression from mouse models of B cell lymphomagenesis driven by gp130 signaling

GSE152226: EDMD-causing emerin mutant myogenic progenitors exhibit impaired differentiation using similar mechanisms

GSE140191: Bystander IFN- activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment

GSE132947: HyperTRIBE uncovers MSI2 increased RNA binding activity and differential regulation in leukemic stem cells [LSK cells]

GSE139016: Effect of the knockdown of MLL1 and MLL2 on pediatric high grade glioma

GSE146156: RNA-seq data of TAGAP WT or KO BMDMs treated with Curdlan

GSE94493: ChIPseq and RNAseq of ER mutant breast cancer cell lines

GSE155618: Role of PTEN in B-ALL

GSE99909: Polysome-profiling in small tissue samples - proof of concept experiment for the use of an optimized non linear gradient

GSE132031: Alterations in Wnt- and/or STAT3 signaling pathways and the immune microenvironment during metastatic progression

GSE128263: Cadmium exposure induces SNAIL1 expression via downregulation of miR-30e in human bronchial epithelial cells

GSE149067: RNA-sequencing of ApoB-reactive CD4+ T cells in mice

GSE139310: Regulation of uterine genes during the peri-implantation period, and its relationship to gene expression changes in the maternal brain in gestating mice (RNA-seq)

GSE155673: Systems biological assessment of immunity to severe and mild COVID-19 infections

GSE139663: HDAC3 maintains oocyte meiosis arrest by repressing amphiregulin expression before the LH surge [HDAC3cKO]

GSE139836: Single-Cell transcriptomes and immune profiling of IgG+ murine memory B cells from Bone Marrow and Spleen.

GSE139989: Nuclear Parkin Regulates Transcriptional Response during Hypoxia

GSE132357: RNA methylation maintains hematopoietic stem cell identity and symmetric commitment

GSE139283: RNA-seq Analysis of Kidney versus Splenic CD4+ and CD8+ T cells in MRL/lpr Lupus Mice

GSE143912: Transcriptome of wildtype and Meis2 mutant in the developing palate

GSE128384: RNA-seq in untreated and flagellin-treated Human Intestinal Myofibroblast cells (HIMF)

GSE125472: Human colon organoids reveal distinct physiologic and oncogenic Wnt responses

GSE136750: A Second Heart Field-derived vasculogenic niche contributes to cardiac lymphatics

GSE139960: Wnt/-catenin activation epigenetically reprograms Regulatory T cells in IBD and progression to dysplasia

GSE141259: Longitudinal single-cell transcriptomics analysis of mouse lung upon bleomycin-induced injury

GSE138672: Loss of endocytosis-associated RabGEF1 causes aberrant morphogenesis and altered autophagy in photoreceptors leading to retinal degeneration

GSE139324: Immune landscape of viral- and carcinogen-drived head and neck cancer

GSE157609: IFI16 functions as an antiviral factor during influenza virus infection by binding viral RNA and enhancing the RIG-I signaling

GSE141268: Activation of a nerve injury transcriptional signature in airway-innervating sensory neurons after lipopolysaccharide induced lung inflammation I

GSE139964: RNA sequencing of Sphk1fl/fl Sphk2-/- and Sphk1-/- Sphk2-/- mESC clones.

GSE148658: SIX6 knockdown in Jurkat-Cas9 T-ALL cell line

GSE141345: A-to-I RNA editing enzyme Adar1 is essential for cardiac morphogenesis

GSE131680: Loss of histone macroH2A1 in hepatocellular carcinoma cells promotes paracrine-mediated chemoresistance and CD4+CD25+ T regulatory cells activation

GSE135514: Transcriptomic insight into salinomycin mechanisms in breast cancer cell lines: synergistic effects with dasatinib and induction of estrogen receptor beta

GSE148564: RNA-seq of WT and Stat3 cKO neural progenitors

GSE141372: Transcriptome wide alternative splicing analysis to determine the effect of CDK12 and CDK13 inhibition by THZ531 in alternative splicing (Total RNA-Seq)

GSE143880: Next Generation Sequencing Analysis of Transcriptomes of the HEK293T-Cas9 cells transfected with plasmid containing programmed scaffold RNA

GSE139248: Genetic heterogeneity profiling by single cell RNA-sequencing

GSE144997: Determining ribosome-associated mRNA in motor neurons in adult GarsC201R/+ mice [16NGS-002-burgess]

GSE139987: Altered expression of long non-coding and messenger RNAs in diabetic nephropathy following treatment with rosiglitazone

GSE132079: RNA-seq analysis of transcriptomic changes in bone marrow LSK cells in WT, G12D, Ezh2-KO and G12D with Ezh2-KO (G12D_Ezh2-KO) mice [RNA-seq]

GSE145012: Transcriptional profiling of germ-free and conventionalized mouse liver

GSE148102: Transcriptomic profiling of isolated mouse Merkel cells [SMARTseq]

GSE133019: Whole genome transcriptome of in vivo Treg cells and ex vivo TGF-beta induced Treg cells from WT and Aim2 knockout mice

GSE149132: Translational control of breast cancer plasticity

GSE141312: Differential Regulation of Alcohol Consumption and Reward by the Transcription Cofactor LMO4

GSE147911: Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced-stage cutaneous T-cell lymphoma [Bulk-seq]

GSE141057: CLIC4 is essential for host competence for metastasis in murine models of breast cancer and a prognostic indicator for human breast cancer

GSE132508: TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer's Disease

GSE149154: LCM-RNAseq on human pyramidal neurons and parvalbumin interneurons from frontal cortex

GSE147910: Human immature neutrophils as a functional biomarker of systemic vascular pathologies

GSE148130: Transcriptome analysis of synovial osteoprogenitor populations in mice with antigen-induced arthritis and non-immunized mice

GSE132728: RNA-sequencing of paired normal-adjacent and liver tumor tissue from WT and Liver MPC-knockout mice

GSE146247: SIRT7 counteracts mesenchymal stem cell senescence via stabilizing heterochromatin

GSE133927: RNA-Sequencing analysis of Meox1 siRNA knockdown in p53 and PTEN deficient triple negative breast cancer in vitro cell lines of BT-549 and MDA-MB-468

GSE143944: Transcriptional profiling of ribociclib-treated sensitive and ribociclib resistant CAMA-1 cells

GSE148629: Transcriptional profiling of the prefontal cortex and nucleus accumbens of mice upon chronic stress

GSE136789: Oligomeric human A1-42 inhibits antigen presentation

GSE145609: Defining totipotency using criteria of increasing stringency

GSE142633: Next-generation sequencing of wild type and 5XFAD transcriptomes for Alzheimer's disease study

GSE131315: The DEL-13 integrin axis promotes Runx-1dependent Foxp3 expression and regulatory T cell responses at mucosal barrier sites

GSE143941: Classification of Primary Liver Cancer with Immunosuppression Mechanisms and Correlation with Genomic Alterations

GSE148937: Targeted next generation sequencing of transcriptomes from human treatment-nave patient-derived prostate tissues, organoids, and organoid-derived cells (unaffected and tumor counterparts)

GSE132438: Fc receptor-like 6 (FCRL6) defines pre-BCR dependent and independent pathways of natural antibody selection

GSE148910: Transcriptome analysis of CHAF1B depletion in Akata EBV+ Burkitt Lymphoma cells

GSE148974: An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (RNAseq Exp2)

GSE143953: RNA sequence of preeclampsia and healthy control placentas