Multi-omics data analysis for everyone

Whether you're handling massive scRNA-seq data sets, or a handful of proteomics samples, Pluto makes it possible for everyone to analyze a wide variety of assays. Transform raw data into meaningful insight and publication-ready plots, with no coding required.

Sequencing-based assays

Store large, raw sequencing data files and transform them into biologically-meaningful results in your browser. Gain critical QC information, quantify targets within and across data sets, and run best-in-class computational biology analyses specific to each assay type.

Bulk RNA-seq

Analyze gene expression at a genome-wide scale to uncover differential expression, altered regulatory pathways, transcriptional networks, and individual biomarkers and targets.

ChIP-seq

Map global binding sites with ChIP-seq and visualize results for histones, transcription factors, or any other protein of interest.

Single cell RNA-seq

Dissect heterogeneity at the single-cell level. Use flexible preprocessing workflows in Pluto scRNA-seq and analyze individual cell gene expression profiles, uncovering cellular diversity and function by cell type, condition.

ATAC-seq

Characterize the chromatin landscape with ATAC-seq. Pluto simplifies the analysis of chromatin accessibility, providing insights into regulatory regions and gene expression control.

Multi-omics

Bring together diverse assay data—from bulk RNA-seq and ATAC-seq to ChIP-seq and more—into a unified multi-omics experiment for in-depth insights into cellular processes and disease mechanisms.

PRO-seq

Map transcriptional activity with precision. PRO-seq analysis in Pluto reveals RNA Polymerase II binding sites, offering a detailed view of gene regulation.

CUT&RUN and CUT&Tag

Streamline epigenetic research with CUT&RUN and CUT&Tag analyses. Our platform offers efficient methods to profile chromatin and transcription factor binding sites, enhancing your epigenetic insights.

Proteomics

Analyze unbiased or targeted proteomics data sets. Create signatures, identify biomarkers, and explore inter- and intra-sample variability.

Custom pipelines

Bring custom pipelines allowing you to design and execute complex bioinformatics workflows, ensuring that your data is processed and analyzed according to your unique requirements.

Other high-throughput assays

Organize -omics and other data to easily search and compare targets of interest across experiments

  • Metabolomics
  • Proteomics
  • Microarray
  • Methyl arrays
  • Looking for something else? Contact us

Low(er) throughput assays

Make the simplest experiments powerful with interactive, customizable figures and robust statistics

  • qPCR
  • ELISA
  • Cytokine panels
  • Pharmacokinetics, inhibition and toxicity
  • Microscopy imaging
  • Mesoscale discovery assays
  • And more!

Automated NGS pipelines

Unlock unprecedented productivity with Pluto's configurable, automated cloud pipelines. Designed to handle a wide array of biological data, Pluto empowers your organization with instant access to reliable and transparent bioinformatics pipelines. Get started immediately without needing your own storage or compute infrastructure so scientists can focus on discovery, not data processing. If desired, you can also bring your own storage buckets for direct and user-friendly reading & writing in Pluto.

Read about post-pipeline analysis

Extensible beyond the browser-based GUI

In addition to our biologist-friendly user interface for running pipelines and analyses for a variety of assays, Pluto's platform is equipped with an API & SDKs, making it easy to integrate into your internal bioinformatics processes. Fetch data from Pluto, analyze it in advanced ways, and push your custom plots back to the canvas for team members to view and comment.

Learn more about programmatic access

Custom in-house pipeline support

Working with a specialized assay or proprietary analytical methods? Our out-of-the-box pipelines are flexible and reliable, but some R&D projects may have bespoke requirements. Pluto offers custom in-house pipeline support, allowing you to integrate your own analytical pipelines into our platform. Our US-based bioinformatics experts are can help with pipeline development, Dockerization, testing, and ensuring seamless integration with Pluto. Putting your custom pipeline in Pluto allows your biologists and other end-users to conduct analysis and visualization in a standardized environment, backed by the power of cloud computing and the convenience of our intuitive interface.

Chat with our Scientific Insights team