Pluto Bioinformatics

GSE94839: Differentially expressed genes between SPOPmut and control in mouse prostate organoids

Bulk RNA sequencing

To provide further insight to the signaling pathways deregulated by SPOP mutation and determine the relevance of these models to human prostate cancer, we performed RNA-seq on SPOP mutant organoids and controls. RNA-seq reads mapped to human and mouse SPOP confirmed appropriate expression of the F133V transgenic transcript without overexpression compared to endogenous mouse Spop. Quantification of gene expression was performed via RSEQtools using GENCODE as reference geneannotation set.; ; Both SPOPmut and SPOPwt were done in the same run. S0 was done in first run; S1 and S2 were done in second run. S3, S4 and S5 were done in third run. ; SOURCE: Deli Liu (del2017@med.cornell.edu) - Weill Cornell Medicine